Evidence map›Paper›PMID 19494071›Full record

ArticleJournal of clinical microbiology2009

Genes related to long polar fimbriae of pathogenic Escherichia coli strains as reliable markers to identify virulent isolates.

Alfredo G Torres, Miguel Blanco, Patricio Valenzuela, Terry M Slater, Shilpa D Patel, Ghizlane Dahbi, Cecilia López, Ximena Fernández Barriga, Jesús E Blanco, Tânia A T Gomes and 2 more

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
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  9. GenotoxicComparative medicine · 2019
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  11. Whole genome sequencing reveals high clonal diversity ofAntimicrobial resistance and infection control · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Alfredo G TorresDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, 77555-1070, USA. altorres@utmb.edu
Miguel Blanco
Patricio Valenzuela
Terry M Slater
Shilpa D Patel
Ghizlane Dahbi
Cecilia López
Ximena Fernández Barriga
Jesús E Blanco
Tânia A T Gomes
Roberto Vidal
Jorge Blanco
Universidade de Santiago de Compostela · ESUniversity of Chile · CLThe University of Texas Medical Branch at Galveston · USUniversidade Federal de São Paulo · BR

Funding

Long Polar Fimbriae of Attaching and Effacing Escherichia coliR01AI079154 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI TORRES, ALFREDO G · 2009 to 2013
$1.9M
NIAID NIH HHS R01 AI079154
6 · The paper itself

Abstract

Lpf (stands for long polar fimbriae) is one of the few adhesive factors of enterohemorrhagic Escherichia coli O157:H7 associated with colonization of the intestine. E. coli O157:H7 strains possess two lpf loci encoding highly regulated fimbrial structures. Database analysis of the genes encoding the major fimbrial subunits demonstrated that they are present in commensal as well as pathogenic (both intestinal and extraintestinal) E. coli strains and in Salmonella strains and that the lpfA1 and lpfA2 genes are highly prevalent among LEE (locus of enterocyte effacement)-positive E. coli strains associated with severe and/or epidemic disease. Further DNA sequence analysis of the lpfA1 and lpfA2 genes from different attaching-and-effacing E. coli strains has led us to the identification of several polymorphisms and the classification of the major fimbrial subunits into distinct variants. Using collections of pathogenic E. coli isolates from Europe and Latin America, we demonstrated that the different lpfA types are associated with the presence of specific intimin (eae) adhesin variants and, most importantly, that they are found in specific E. coli pathotypes. Our results showed that the use of these fimbrial genes as markers, in combination with the different intimin types, resulted in a specific test for the identification of E. coli O157:H7, distinguishing it from other pathogenic E. coli strains.

Indexed as

DNA, BacterialEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsEuropeFimbriae, BacterialGenetic MarkersHumansLatin AmericaMolecular Sequence DataSequence Analysis, DNAUnited StatesVirulenceVirulence FactorsDNA, BacterialEscherichia coli ProteinsGenetic MarkersVirulence Factors

Identifiers

PMID19494071
PMCPMC2725649
OpenAlexW2131446724

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.