Evidence map›Paper›PMID 19494001›Full record

ArticleJournal of virology2009

A complicated message: Identification of a novel PB1-related protein translated from influenza A virus segment 2 mRNA.

Helen M Wise, Agnes Foeglein, Jiechao Sun, Rosa Maria Dalton, Sheetal Patel, Wendy Howard, Emma C Anderson, Wendy S Barclay, Paul Digard

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 212 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
212citing papers in PubMed, 1 pooled it
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

212 citing papers in PubMed, 1 synthesis or guideline pooled it, 374 citations in OpenAlex.

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152 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Helen M WiseDepartment of Pathology, University of Cambridge, United Kingdom.
Agnes Foeglein
Jiechao Sun
Rosa Maria Dalton
Sheetal Patel
Wendy Howard
Emma C Anderson
Wendy S Barclay
Paul Digard
University of Cambridge · GBImperial College London · GBUniversity of Warwick · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C516495/2Medical Research Council G0700815Medical Research Council G0701220Wellcome Trust
6 · The paper itself

Abstract

Influenza A virus segment 2 is known to encode two polypeptides in overlapping open reading frames: PB1, the polymerase, and PB1-F2, a proapoptotic virulence factor. We show that a third major polypeptide is synthesized from PB1 mRNA via differential AUG codon usage. PB1 codon 40 directs translation of an N-terminally truncated version of the polypeptide (N40) that lacks transcriptase function but nevertheless interacts with PB2 and the polymerase complex in the cellular environment. Importantly, the expression of N40, PB1-F2, and PB1 are interdependent, and certain mutations previously used to ablate PB1-F2 production affected N40 accumulation. Removal of the PB1-F2 AUG upregulated N40 synthesis, while truncating PB1-F2 after codon 8 (with a concomitant M40I change in PB1) abolished N40 expression. A virus lacking both N40 and PB1-F2 replicated normally. However, viruses that did not express N40 but retained an intact PB1-F2 gene overexpressed PB1 early in infection and replicated slowly in tissue culture. Thus, the influenza A virus proteome includes a 12th primary translation product that (similarly to PB1-F2) is nonessential for virus viability but whose loss, in particular genetic backgrounds, is detrimental to virus replication.

Indexed as

Protein BiosynthesisHumansInfluenza A virusPeptide FragmentsPeptidesRNA, MessengerRNA, ViralViral ProteinsVirus Replicationinfluenza virus polymerase basic protein 1Peptide FragmentsPeptidesRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID19494001
PMCPMC2715786
OpenAlexW2135213915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.