Evidence map›Paper›PMID 19493994›Full record

ArticleJournal of virology2009

Simian immunodeficiency virus SIVrcm, a unique CCR2-tropic virus, selectively depletes memory CD4+ T cells in pigtailed macaques through expanded coreceptor usage in vivo.

Rajeev Gautam, Thaidra Gaufin, Isolde Butler, Aarti Gautam, Mary Barnes, Daniel Mandell, Melissa Pattison, Coty Tatum, Jeanne Macfarland, Christopher Monjure and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Rajeev GautamTulane National Primate Research Center, Covington, LA 70433, USA.
Thaidra Gaufin
Isolde Butler
Aarti Gautam
Mary Barnes
Daniel Mandell
Melissa Pattison
Coty Tatum
Jeanne Macfarland
Christopher Monjure
Preston A Marx
Ivona Pandrea
Cristian Apetrei
Czech Academy of Sciences, Institute of Microbiology · CZHospital for Tropical Diseases · VNTulane University · US

Funding

ZCM:A NOVEL BROAD-SPECTRUM MICROBICIDE FOR SEXUALLY TRANSMITTED INFECTIONSP51RR000164 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI VEAZEY, RONALD S. · 1985 to 2011
$100.1M
TNF AND MCP-1 IN RETROVIRUS-INDUCED BRAIN DISEASEP20RR020159 · NCRR · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI KOUSOULAS, KONSTANTIN G · 2004 to 2011
$16.1M
Pathogenesis of SIV in African green monkeysR01AI064066 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VASILE PANDREA, IVONA · 2005 to 2010
$2.8M
Pathogenesis of New SIVsm Lineages in Rhesus MacaquesR01AI065325 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI APETREI, CRISTIAN · 2006 to 2009
$2.6M
EXPANSION OF BSL2 CAGING FOR INFECTIOUS DISEASE RESEARCHG20RR019628 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI BOHM, RUDOLF P · 2004 to 2004
$700k
BLDG D RENOV-ANIMAL RESOURCES IMPROVEMENTSG20RR016930 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI BLANCHARD, JAMES L · 2001 to 2001
$700k
BREEDING FACILITY AND SECURITY IMPROVEMENTG20RR018397 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI LACKNER, ANDREW A · 2003 to 2003
$697k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012112 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI GERONE, PETER J · 1996 to 1996
–
IMPROVEMENT OF ANIMAL RESOURCESG20RR013466 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI BLANCHARD, JAMES L · 1998 to 1998
–
ANIMAL HOLDING FACILITY FOR MONKEYS INFECTED WITH SIMIANG20RR005169 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI GERONE, PETER J · 1989 to 1989
–
NCRR NIH HHS C06 RR12112NCRR NIH HHS G20 RR013466NCRR NIH HHS G20 RR016930NCRR NIH HHS G20 RR018397NCRR NIH HHS G20 RR019628NCRR NIH HHS P20 RR020159NCRR NIH HHS P51 RR000164NCRR NIH HHS RR013466NCRR NIH HHS RR018397NCRR NIH HHS RR019628NCRR NIH HHS RR05169NIAID NIH HHS R01 AI064066NIAID NIH HHS R01 AI065325
6 · The paper itself

Abstract

Simian immunodeficiency virus SIVrcm, which naturally infects red-capped mangabeys (RCMs), is the only SIV that uses CCR2 as its main coreceptor due to the high frequency of a CCR5 deletion in RCMs. We investigated the dynamics of SIVrcm infection to identify specific pathogenic mechanisms associated with this major difference in SIV biology. Four pigtailed macaques (PTMs) were infected with SIVrcm, and infection was monitored for over 2 years. The dynamics of in vivo SIVrcm replication in PTMs was similar to that of other pathogenic and nonpathogenic lymphotropic SIVs. Plasma viral loads (VLs) peaked at 10(7) to 10(9) SIVrcm RNA copies/ml by day 10 postinoculation (p.i.). A viral set point was established by day 42 p.i. at 10(3) to 10(5) SIVrcm RNA copies/ml and lasted up to day 180 p.i., when plasma VLs decreased below the threshold of detection, with blips of viral replication during the follow-up. Intestinal SIVrcm replication paralleled that of plasma VLs. Up to 80% of the CD4(+) T cells were depleted by day 28 p.i. in the gut. The most significant depletion (>90%) involved memory CD4(+) T cells. Partial CD4(+) T-cell restoration was observed in the intestine at later time points. Effector memory CD4(+) T cells were the least restored. SIVrcm strains isolated from acutely infected PTMs used CCR2 coreceptor, as reported, but expansion of coreceptor usage to CCR4 was also observed. Selective depletion of effector memory CD4(+) T cells is in contrast with predicted in vitro tropism of SIVrcm for macrophages and is probably due to expansion of coreceptor usage. Taken together, these findings emphasize the importance of understanding the selective forces driving viral adaptation to a new host.

Indexed as

AnimalsCD4-Positive T-LymphocytesCells, CulturedDisease Models, AnimalGene ExpressionHIVHIV InfectionsHumansLeukocytes, MononuclearMacaca nemestrinaMolecular Sequence DataReceptors, CCR2Receptors, CCR4Receptors, HIVSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusCCR4 protein, humanReceptors, CCR2Receptors, CCR4Receptors, HIV

Identifiers

PMID19493994
PMCPMC2715763
OpenAlexW1978949422

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.