Evidence map›Paper›PMID 19493314›Full record

ArticlePigment cell & melanoma research2009

Comparison of melanoblast expression patterns identifies distinct classes of genes.

Stacie K Loftus, Laura L Baxter, Kristina Buac, Dawn E Watkins-Chow, Denise M Larson, William J Pavan

Open access · greenAbstract read
In one paragraph

Article in Pigment cell & melanoma research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. The clinicopathologic spectrum and genomic landscape of de-/trans-differentiated melanoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A curated online resource for SOX10 and pigment cell molecular genetic pathways.Database : the journal of biological databases and curation · 2010
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Stacie K LoftusNational Institutes of Health, National Human Genome Research Institute, Genetic Disease Research Branch, Bethesda, MD, USA. sloftus@mail.nih.gov
Laura L Baxter
Kristina Buac
Dawn E Watkins-Chow
Denise M Larson
William J Pavan
National Institutes of Health · USNational Human Genome Research Institute · US

Funding

Function genomic analysis of neural crest developmentZIAHG000136 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PAVAN, WILLIAM J · 2009 to 2023
$13.6M
Function genomic analysis of neural crest developmentZ01HG000136 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PAVAN, WILLIAM J · 1999 to 2008
$2.3M
Intramural NIH HHS Z01 HG000136Intramural NIH HHS Z99 HG999999
6 · The paper itself

Abstract

A full understanding of transcriptional regulation requires integration of information obtained from multiple experimental datasets. These include datasets annotating gene expression within the context of an entire organism under normal and genetically perturbed conditions. Here we describe an expression dataset annotating pigment cell-expressed genes of the developing melanocyte and retinal pigmented epithelium lineages. Expression images are annotated and available at http://research.nhgri.nih.gov/manuscripts/Loftus/March2009/. Data are also summarized in a standardized manner using a universal melanoblast scoring scale that accounts for the embryonic location of cells and regional cell density. This approach allowed us to classify 14 pigment genes into four groupings classified by cell lineage expression, temporal-spatial context, and differential alteration in response to altered MITF and SOX10 status. Significant differences in regional populations were also observed across inbred strain backgrounds, highlighting the value of this approach to identify modifier allele influences on melanoblast number and distributions. This analysis revealed novel features of in vivo expression patterns that are not measurable by in vitro-based assays, providing data that in combination with genomic analyses will allow modeling of pigment cell gene expression in development and disease.

Indexed as

Databases, Nucleic AcidGene Expression Regulation, DevelopmentalAnimalsGene Expression ProfilingHumansMelanocytesMiceMice, Inbred StrainsMice, TransgenicMicrophthalmia-Associated Transcription FactorOligonucleotide Array Sequence AnalysisPigmentationRetinal Pigment EpitheliumSOXE Transcription FactorsStem CellsMicrophthalmia-Associated Transcription FactorMitf protein, mouseSox10 protein, mouseSOXE Transcription Factors

Identifiers

PMID19493314
PMCPMC3007121
OpenAlexW1988605406

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.