Evidence map›Paper›PMID 19490971›Full record

ArticleJournal of virological methods2009

In vivo biotinylation and capture of HIV-1 matrix and integrase proteins.

Michael Belshan, Cameron J Schweitzer, Meghan R Donnellan, Richard Lu, Alan Engelman

Abstract read
In one paragraph

Article in Journal of virological methods, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Michael BelshanDepartment of Medical Microbiology and Immunology, Creighton University School of Medicine, Omaha, NE 68178, United States. michaelbelshan@creighton.edu
Cameron J Schweitzer
Meghan R Donnellan
Richard Lu
Alan Engelman
Creighton University · USHarvard University · US

Funding

VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
Biochemical Mechanism of HIV DNA IntegrationR37AI039394 · NIAID · DANA-FARBER CANCER INST · PI Alan N. Engelman · 2010 to 2026
$10.2M
BIOCHEMICAL MECHANISM OF HIV DNA INTEGRATIONR01AI039394 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ENGELMAN, ALAN N. · 1996 to 2009
$3.8M
ANIMAL FACILITY STANDARDS: LIGHT AND RETINAL PATHOLOGYR24RR001635 · NCRR · UNIVERSITY OF FLORIDA · PI DAWSON, WILLIAM W · 1985 to 1985
–
NCRR NIH HHS P20 RR015635NCRR NIH HHS P20 RR01635NIAID NIH HHS AI39394NIAID NIH HHS R01 AI039394NIAID NIH HHS R37 AI039394
6 · The paper itself

Abstract

This report describes the adaptation of the biotin ligase BirA-biotin acceptor sequence (BAS) labeling system to biotinylate specific human immunodeficiency virus 1 (HIV-1) proteins in vivo. Two HIV-1 clones were constructed, with the BAS introduced into the matrix region of gag or the integrase region of pol. Specific biotinylation of target proteins in virions was observed when molecular clones were co-expressed with BirA. Both BAS-containing viruses propagated in SupT1 T-cells although replication of the integrase clone was delayed. Further studies demonstrated that the integrase insertion yielded an approximate 40% reduction in single-round infectivity as assessed on MAGI-5 indicator cells, as well as in the in vitro integration activity of preintegration complexes extracted from acutely infected C8166-45 T-cells. Biotinylation of the integrase BAS tag furthermore rendered this virus non-infectious. The matrix viral clone by contrast displayed wild-type behavior under all conditions tested. These results therefore establish a system whereby biotinylated matrix protein in the context of replication-competent virus could be used to label and capture viral protein complexes in vivo.

Indexed as

Amino Acid SequenceBinding SitesBiotinylationCarbon-Nitrogen LigasesCell LineEscherichia coli Proteinsgag Gene Products, Human Immunodeficiency VirusHIV-1HIV AntigensHIV IntegraseHumansMolecular Sequence DataRepressor ProteinsStaining and LabelingT-LymphocytesbirA protein, E coliCarbon-Nitrogen LigasesEscherichia coli Proteinsgag Gene Products, Human Immunodeficiency VirusHIV AntigensHIV Integrasep17 protein, Human Immunodeficiency Virus Type 1p31 integrase protein, Human immunodeficiency virus 1Repressor Proteins

Identifiers

PMID19490971
PMCPMC2691866
OpenAlexW1966276515

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.