Evidence map›Paper›PMID 19487368›Full record

ArticleHuman molecular genetics2009

Discrimination of common and unique RNA-binding activities among Fragile X mental retardation protein paralogs.

Jennifer C Darnell, Claire E Fraser, Olga Mostovetsky, Robert B Darnell

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 169 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jennifer C DarnellLaboratory of Molecular Neuro-oncology, The Rockefeller University, New York, NY 10065, USA. darneje@rockefeller.edu
Claire E Fraser
Olga Mostovetsky
Robert B Darnell
Howard Hughes Medical Institute · USRockefeller University · US

Funding

NEUROLOGY AND THE MOLECULAR ROLE OF N-RBPS IN THE BRAINR01NS034389 · NINDS · ROCKEFELLER UNIVERSITY · PI DARNELL, ROBERT B · 1995 to 2016
$6.3M
IDENTIFICATION OF FMRP TARGET RNASR01HD040647 · NICHD · ROCKEFELLER UNIVERSITY · PI DARNELL, JENNIFER C · 2001 to 2017
$4.5M
Structure/function studies of RBPs in neurologic diseaseR01NS040955 · NINDS · ROCKEFELLER UNIVERSITY · PI DARNELL, ROBERT B · 2001 to 2005
$3.3M
Neurology and the molecular role of N-RBPs in the brainR56NS034389 · NINDS · ROCKEFELLER UNIVERSITY · PI DARNELL, ROBERT B · 2012 to 2012
$590k
Howard Hughes Medical InstituteNICHD NIH HHS 5R01 HD40647NICHD NIH HHS R01 HD040647NICHD NIH HHS R01 HD40647NINDS NIH HHS NS40955NINDS NIH HHS R01S NS34389
6 · The paper itself

Abstract

Fragile X mental retardation is caused by loss-of-function of a single gene encoding FMRP, an RNA-binding protein that harbors three canonical RNA-binding domains, two KH-type and one RGG box. Two autosomal paralogs of FMRP, FXR1P and FXR2P, are similar to FMRP in their overall structure, including the presence of putative RNA-binding domains, but to what extent they provide functional redundancy with FMRP is unclear. Although FMRP has been characterized as a polyribosome-associated regulator of translation, less is known about the functions of FXR1P and FXR2P. For example, FMRP binds intramolecular G-quadruplex and kissing complex RNA (kcRNA) ligands via the RGG box and KH2 domain, respectively, although the RNA ligands of FXR1P and FXR2P are unknown. Here we demonstrate that FXR1P and FXR2P KH2 domains bind kcRNA ligands with the same affinity as the FMRP KH2 domain although other KH domains do not. RNA ligand recognition by this family is highly conserved, as the KH2 domain of the single Drosophila ortholog, dFMRP, also binds kcRNA. kcRNA was able to displace FXR1P and FXR2P from polyribosomes as it does for FMRP, and this displacement was FMRP-independent. This suggests that all three family members recognize the same binding site on RNA mediating their polyribosome association, and that they may be functionally redundant with regard to this aspect of translational control. In contrast, FMRP is unique in its ability to recognize G-quadruplexes, suggesting the FMRP RGG domain may play a non-redundant role in the pathophysiology of the disease.

Indexed as

Amino Acid SequenceAnimalsFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeG-QuadruplexesHumansKineticsMiceMolecular Sequence DataNeuronsPolyribosomesProtein BindingProtein Structure, TertiaryRNA-Binding ProteinsSequence AlignmentFMR1 protein, humanFmr1 protein, mouseFragile X Messenger Ribonucleoprotein 1Fxr1h protein, mouseFXR1 protein, humanFXR2 protein, humanFXR2 protein, mouseRNA-Binding Proteins

Identifiers

PMID19487368
PMCPMC2722981
OpenAlexW2116174991

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.