Evidence map›Paper›PMID 19486671›Full record

ArticleBiophysical journal2009

Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other "hosts".

David L Bostick, Charles L Brooks

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. The Role of Architectural Forces in Ion Selectivity.Advances in experimental medicine and biology · 2026
    Article
  2. Fluoride Transport and Inhibition Across CLC Transporters.Handbook of experimental pharmacology · 2024
    Article
  3. Review
  4. Article
  5. Membrane Exporters of Fluoride Ion.Annual review of biochemistry · 2021
    Review
  6. Article
  7. Ion binding sites and their representations by reduced models.The journal of physical chemistry. B · 2012
    Article
  8. Ionizable side chains at catalytic active sites of enzymes.European biophysics journal : EBJ · 2012
    Article
  9. Article
  10. Article
  11. Thermodynamics of ion selectivity in the KcsA K+ channel.The Journal of general physiology · 2011
    Review
  12. Ion selectivity in channels and transporters.The Journal of general physiology · 2011
    Review
  13. Dehydration and ionic conductance quantization in nanopores.Journal of physics. Condensed matter : an Institute of Physics journal · 2010
    Article
  14. Multiple Scales in the Simulation of Ion Channels and Proteins.The journal of physical chemistry. C, Nanomaterials and interfaces · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

2 authors.

David L BostickDepartment of Chemistry and Program in Biophysics, The University of Michigan, Ann Arbor, Michigan, USA.
Charles L Brooks

Funding

YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI KNOLL, ERIC · 1990 to 2011
$22.0M
NCRR NIH HHS P41 RR006009NCRR NIH HHS RR06009
6 · The paper itself

Abstract

To provide utility in understanding the molecular evolution of ion-selective biomembrane channels/transporters, globular proteins, and ionophoric compounds, as well as in guiding their modification and design, we present a statistical mechanical basis for deconstructing the impact of the coordination structure and chemistry of selective multidentate ionic complexes. The deconstruction augments familiar ideas in liquid structure theory to realize the ionic complex as an open ion-ligated system acting under the influence of an "external field" provided by the host (or surrounding medium). Using considerations derived from this basis, we show that selective complexation arises from exploitation of a particular ion's coordination preferences. These preferences derive from a balance of interactions much like that which dictates the Hofmeister effect. By analyzing the coordination-state space of small family IA and VIIA ions in simulated fluid media, we derive domains of coordinated states that confer selectivity for a given ion upon isolating and constraining particular attributes (order parameters) of a complex comprised of a given type of ligand. We demonstrate that such domains may be used to rationalize the ion-coordinated environments provided by selective ionophores and biological ion channels/transporters of known structure, and that they can serve as a means toward deriving rational design principles for ion-selective hosts.

Indexed as

Models, ChemicalAlgorithmsBromineChloridesComputer SimulationFluorineIonsLithiumMembrane Transport ProteinsOxygenPotassiumSodiumSolventsWaterBromineChloridesFluorineIonsLithiumMembrane Transport ProteinsOxygenPotassiumSodiumSolventsWater

Identifiers

PMID19486671
PMCPMC2894556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.