Evidence map›Paper›PMID 19486297›Full record

ArticleMolecular microbiology2009

Cognate Site Identifier analysis reveals novel binding properties of the Sex Inducer homeodomain proteins of Cryptococcus neoformans.

Brynne C Stanton, Steven S Giles, Emilia K Kruzel, Christopher L Warren, Aseem Z Ansari, Christina M Hull

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Dissecting the homeodomainbioRxiv : the preprint server for biology · 2025
    Article
  3. Ontogenetic Variation in Macrocyclic and Hemicyclic Poplar Rust Fungi.International journal of molecular sciences · 2022
    Article
  4. High-Density RNA Microarrays Synthesized In Situ by Photolithography.Angewandte Chemie (International ed. in English) · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Establishing an unusual cell type: how to make a dikaryon.Current opinion in microbiology · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Brynne C StantonDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin, Madison, Madison, WI 53706, USA.
Steven S Giles
Emilia K Kruzel
Christopher L Warren
Aseem Z Ansari
Christina M Hull
Energy Center of Wisconsin · USUniversity of Wisconsin–Madison · US

Funding

Sexual development in Cryptococcus neoformansR01AI064287 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 2005 to 2009
$1.5M
ACQUISITION OF MASS SPECTROMETER FOR CORE FACILITYS10RR013790 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI RAINES, RONALD T · 1999 to 1999
–
NCRR NIH HHS S10 RR013790NCRR NIH HHS S10 RR13790NIAID NIH HHS R01 AI064287PHS HHS R01 G069420
6 · The paper itself

Abstract

Homeodomain proteins function in fungi to specify cell types and control sexual development. In the meningoencephalitis-causing fungal pathogen Cryptococcus neoformans, sexual development leads to the production of spores (suspected infectious particles). Sexual development is controlled by the homeodomain transcription factors Sxi1alpha and Sxi2a, but the mechanism by which they act is unknown. To understand how the Sxi proteins regulate development, we characterized their binding properties in vitro, showing that Sxi2a does not require a partner to bind DNA with high affinity. We then utilized a novel approach, Cognate Site Identifier (CSI) arrays, to define a comprehensive DNA-binding profile for Sxi2a, revealing a consensus sequence distinct from those of other fungal homeodomain proteins. Finally, we show that the homeodomains of both Sxi proteins are required for sexual development, a departure from related fungi. Our findings support a model in which Sxi1alpha and Sxi2a control sexual development in a homeodomain-dependent manner by binding to DNA sequences that differ from those defined in previously established fungal paradigms.

Indexed as

Consensus SequenceCryptococcus neoformansDNA, FungalElectrophoretic Mobility Shift AssayFungal ProteinsGene Expression Regulation, FungalGenetic Complementation TestHomeodomain ProteinsMutagenesis, Site-DirectedOligonucleotide Array Sequence AnalysisProtein BindingSubstrate SpecificityTranscription FactorsDNA, FungalFungal ProteinsHomeodomain ProteinsTranscription Factors

Identifiers

PMID19486297
PMCPMC2776684
OpenAlexW2065691497

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.