Evidence map›Paper›PMID 19485417›Full record

ArticleBiochemistry2009

Genome mining in Streptomyces avermitilis: A biochemical Baeyer-Villiger reaction and discovery of a new branch of the pentalenolactone family tree.

Jiaoyang Jiang, Charles N Tetzlaff, Satoshi Takamatsu, Masato Iwatsuki, Mamoru Komatsu, Haruo Ikeda, David E Cane

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Potential ofMetabolites · 2024
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  6. Bacterial terpenome.Natural product reports · 2021
    Review
  7. Review
  8. Article
  9. Mining the Genome ofFrontiers in microbiology · 2018
    Article
  10. Herpetopanone, a diterpene fromBeilstein journal of organic chemistry · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Terpene synthases are widely distributed in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jiaoyang JiangDepartment of Chemistry, Box H, Brown University, Providence, Rhode Island 02912-9108, USA.
Charles N Tetzlaff
Satoshi Takamatsu
Masato Iwatsuki
Mamoru Komatsu
Haruo Ikeda
David E Cane
Kitasato University · JPBrown University · US

Funding

STEREOCHEMICAL STUDIES OF ISOPRENOID BIOSYNTHESISR01GM030301 · NIGMS · BROWN UNIVERSITY · PI CANE, DAVID E · 1985 to 2015
$5.4M
STEROCHEMICAL STUDIES 0F ISOPRENOID BIOSYNTHESISR37GM030301 · NIGMS · BROWN UNIVERSITY · PI CANE, DAVID E · 1994 to 2003
$1.8M
NIGMS NIH HHS GM30301NIGMS NIH HHS R01 GM030301NIGMS NIH HHS R37 GM030301
6 · The paper itself

Abstract

Incubation of 1-deoxy-11-oxopentalenic acid (12) with recombinant PtlE protein from Streptomyces avermitilis in the presence of NADPH and catalytic FAD gave the Baeyer-Villiger oxidation product, the previously unknown compound neopentalenolactone D (13), representing a new branch of the pentalenolactone biosynthetic pathway. The structure and stereochemistry of the derived neopentalenolactone D methyl ester (13-Me) were fully assigned by a combination of GC-MS and NMR analysis and confirmed by X-ray crystallography. Neopentalenolactone D (13) was also isolated from engineered cultures of S. avermitilis from which the ptlD gene within the 13.4-kb (neo)-ptl biosynthetic gene cluster had been deleted. The DeltaptlEDeltaptlD double deletion mutant accumulated 12, the substrate for the ptlE gene product, while the corresponding single DeltaptlE mutant produced 12 as well as the related oxidation products 14 and 15. Engineered strains of S. avermitilis, SUKA5 and pKU462::ermRp-ptl cluster, harboring the complete (neo)ptl cluster produced the oxidized lactone 18 and the closely related seco acid hydrolysis products 16 and 17.

Indexed as

Genome, BacterialBase SequenceCatalysisCrystallography, X-RayDNA PrimersElectrophoresis, Polyacrylamide GelGas Chromatography-Mass SpectrometryNuclear Magnetic Resonance, BiomolecularOpen Reading FramesSesquiterpenesStreptomycesarenaemycin EDNA PrimersSesquiterpenes

Identifiers

PMID19485417
PMCPMC2747811
OpenAlexW2021710020

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.