Evidence map›Paper›PMID 19485365›Full record

ArticleJournal of the American Chemical Society2009

Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution.

Jonathan Farjon, Jérôme Boisbouvier, Paul Schanda, Arthur Pardi, Jean-Pierre Simorre, Bernhard Brutscher

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
  2. LowCOST-HSQC Variants for Fast-Pulsing High ωMagnetic resonance in chemistry : MRC · 2026
    Article
  3. Review
  4. Application of NMR to Large RNAs.Journal of molecular biology · 2025
    Review
  5. Article
  6. Imino chemical shift assignments of tRNABiomolecular NMR assignments · 2024
    Article
  7. Article
  8. Targeting the Main Protease (MACS chemical biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Pressure pushes tRNAProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. NMR assignment of non-modified tRNABiomolecular NMR assignments · 2022
    Article
  18. Biomolecular NMR assignments · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Jonathan FarjonInstitut de Biologie Structurale-Jean-Pierre Ebel, UMR5075 CNRS-CEA-UJF, 41, rue Jules Horowitz, 38027 Grenoble Cedex, France.
Jérôme Boisbouvier
Paul Schanda
Arthur Pardi
Jean-Pierre Simorre
Bernhard Brutscher
CEA Grenoble · FRUniversity of Colorado Boulder · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversité Grenoble Alpes · FR

Funding

Structure and Dynamics of RNAR01AI033098 · NIAID · UNIVERSITY OF COLORADO AT BOULDER · PI PARDI, ARTHUR · 1992 to 2006
$1.7M
Structure and Dynamics of RNA and Protein-RNA ComplexesR56AI033098 · NIAID · UNIVERSITY OF COLORADO · PI PARDI, ARTHUR · 2008 to 2008
$295k
NIAID NIH HHS AI33098NIAID NIH HHS R01 AI033098NIAID NIH HHS R56 AI033098
6 · The paper itself

Abstract

Atomic-resolution information on the structure and dynamics of nucleic acids is essential for a better understanding of the mechanistic basis of many cellular processes. NMR spectroscopy is a powerful method for studying the structure and dynamics of nucleic acids; however, solution NMR studies are currently limited to relatively small nucleic acids at high concentrations. Thus, technological and methodological improvements that increase the experimental sensitivity and spectral resolution of NMR spectroscopy are required for studies of larger nucleic acids or protein-nucleic acid complexes. Here we introduce a series of imino-proton-detected NMR experiments that yield an over 2-fold increase in sensitivity compared to conventional pulse schemes. These methods can be applied to the detection of base pair interactions, RNA-ligand titration experiments, measurement of residual dipolar (15)N-(1)H couplings, and direct measurements of conformational transitions. These NMR experiments employ longitudinal spin relaxation enhancement techniques that have proven useful in protein NMR spectroscopy. The performance of these new experiments is demonstrated for a 10 kDa TAR-TAR*(GA) RNA kissing complex and a 26 kDa tRNA.

Indexed as

HIVHydrogen BondingImino SugarsKineticsModels, MolecularNuclear Magnetic Resonance, BiomolecularNucleic Acid ConformationRNARNA, Transfer, ValRNA, ViralSolutionsImino SugarsRNARNA, Transfer, ValRNA, ViralSolutions

Identifiers

PMID19485365
PMCPMC2846706
OpenAlexW2029704872

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.