Evidence map›Paper›PMID 19484122›Full record

ArticlePloS one2009

Origin of saxitoxin biosynthetic genes in cyanobacteria.

Ahmed Moustafa, Jeannette E Loram, Jeremiah D Hackett, Donald M Anderson, F Gerald Plumley, Debashish Bhattacharya

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 133 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Biosynthesis of guanidine-containing natural products in cyanobacteria.Journal of industrial microbiology & biotechnology · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. From theFrontiers in microbiology · 2021
    Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Ahmed MoustafaInterdisciplinary Program in Genetics, University of Iowa, Iowa City, IA, USA.
Jeannette E Loram
Jeremiah D Hackett
Donald M Anderson
F Gerald Plumley
Debashish Bhattacharya
Bermuda Institute of Ocean Sciences · BMUniversity of Iowa · USUniversity of Arizona · USWoods Hole Oceanographic Institution · US

Funding

Control of MAPK Signaling by Cell Polarity ProteinsR01GM098629 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES · 2011 to 2024
$4.4M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Woods Hole Center for Oceans and Human HealthP50ES012742 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2004 to 2009
$2.8M
Developing genomic resources:the toxic dinoflagellateR01ES013679 · NIEHS · UNIVERSITY OF IOWA · PI BHATTACHARYA, DEBASHISH · 2006 to 2008
$1.1M
NIEHS NIH HHS P50 ES012742NIEHS NIH HHS R01 ES013679NIEHS NIH HHS R01 ES013679-01A2NIGMS NIH HHS R01 GM098629NIGMS NIH HHS T32 GM008629NIGMS NIH HHS T32 GM98629
6 · The paper itself

Abstract

backgroundParalytic shellfish poisoning (PSP) is a potentially fatal syndrome associated with the consumption of shellfish that have accumulated saxitoxin (STX). STX is produced by microscopic marine dinoflagellate algae. Little is known about the origin and spread of saxitoxin genes in these under-studied eukaryotes. Fortuitously, some freshwater cyanobacteria also produce STX, providing an ideal model for studying its biosynthesis. Here we focus on saxitoxin-producing cyanobacteria and their non-toxic sisters to elucidate the origin of genes involved in the putative STX biosynthetic pathway. METHODOLOGY/PRINCIPAL

findingsWe generated a draft genome assembly of the saxitoxin-producing (STX+) cyanobacterium Anabaena circinalis ACBU02 and searched for 26 candidate saxitoxin-genes (named sxtA to sxtZ) that were recently identified in the toxic strain Cylindrospermopsis raciborskii T3. We also generated a draft assembly of the non-toxic (STX-) sister Anabaena circinalis ACFR02 to aid the identification of saxitoxin-specific genes. Comparative phylogenomic analyses revealed that nine putative STX genes were horizontally transferred from non-cyanobacterial sources, whereas one key gene (sxtA) originated in STX+ cyanobacteria via two independent horizontal transfers followed by fusion. In total, of the 26 candidate saxitoxin-genes, 13 are of cyanobacterial provenance and are monophyletic among the STX+ taxa, four are shared amongst STX+ and STX-cyanobacteria, and the remaining nine genes are specific to STX+ cyanobacteria. CONCLUSIONS/SIGNIFICANCE: Our results provide evidence that the assembly of STX genes in ACBU02 involved multiple HGT events from different sources followed presumably by coordination of the expression of foreign and native genes in the common ancestor of STX+ cyanobacteria. The ability to produce saxitoxin was subsequently lost multiple independent times resulting in a nested relationship of STX+ and STX- strains among Anabaena circinalis strains.

Indexed as

AnabaenaAnimalsCyanobacteriaGenomeGenome, BacterialGenomicsLikelihood FunctionsMarine ToxinsModels, BiologicalModels, GeneticNucleic Acid ConformationPhylogenyRNA, Ribosomal, 16SSaxitoxinSymbiosisMarine ToxinsRNA, Ribosomal, 16SSaxitoxin

Identifiers

PMID19484122
PMCPMC2684587
OpenAlexW2127767299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.