Evidence map›Paper›PMID 19482971›Full record

ArticleThe Plant cell2009

FAR-RED ELONGATED HYPOCOTYL1 and FHY1-LIKE associate with the Arabidopsis transcription factors LAF1 and HFR1 to transmit phytochrome A signals for inhibition of hypocotyl elongation.

Seong Wook Yang, In-Cheol Jang, Rossana Henriques, Nam-Hai Chua

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 92 citations in OpenAlex.

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  5. Downregulation ofFrontiers in plant science · 2023
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  9. Recruitment of an ancient branching program to suppress carpel development in maize flowers.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  13. EndophyticFrontiers in microbiology · 2021
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  14. Plant communications · 2020
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  15. Article
  16. Hinge region ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Seong Wook YangLaboratory of Plant Molecular Biology, Rockefeller University, New York, New York 10065, USA.
In-Cheol Jang
Rossana Henriques
Nam-Hai Chua
Rockefeller University · US

Funding

LIGHT-RESPONSIVE GENESR01GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 1991 to 2011
$5.3M
Light Responsive GenesR56GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 2007 to 2007
$542k
NIGMS NIH HHS GM44640NIGMS NIH HHS R01 GM044640NIGMS NIH HHS R56 GM044640
6 · The paper itself

Abstract

Among the five phytochromes in Arabidopsis thaliana, phytochrome A (phyA) plays a major role in seedling deetiolation. Mutant analyses have identified more than 10 positive components acting downstream of phyA to inhibit hypocotyl elongation. However, their sites of action and their hierarchical relationships are poorly understood. Here, we investigated the genetic and molecular relationship between two homologous proteins, FAR-RED ELONGATED HYPOCOTYL1 (FHY1) and FHY1-LIKE (FHL), and two transcription factors, LONG AFTER FAR-RED LIGHT1 (LAF1) and LONG HYPOCOTYL IN FAR-RED1 (HFR1). Analyses of double and triple mutants showed that LAF1, a myb factor, and HFR1, a basic helix-loop-helix factor, independently transmit phyA signals downstream of FHY1 and FHL. Coimmunoprecipitation experiments showed that phyA, FHY1, FHL, LAF1, and HFR1 are components of protein complexes in vivo. In vitro pull-down assays demonstrated direct interactions between partner proteins with the N-terminal region of FHY1, as well as that of FHL, interacting with the LAF1 N-terminal portion and the HFR1 C-terminal region. These results suggest that, in addition to assisting phyA nuclear accumulation, FHY1 and FHL are required to assemble photoreceptor/transcription factor complexes for phyA signaling.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsHypocotylMutationNuclear ProteinsPhenotypePhytochromePhytochrome AProtein Interaction MappingSignal TransductionTrans-ActivatorsTranscription FactorsArabidopsis ProteinsAt1g02340 protein, ArabidopsisDNA-Binding ProteinsFHL protein, ArabidopsisFHY1 protein, ArabidopsisLAF1 protein, ArabidopsisNuclear ProteinsPhytochromePhytochrome ATrans-ActivatorsTranscription Factors

Identifiers

PMID19482971
PMCPMC2700525
OpenAlexW2153293538

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.