Evidence map›Paper›PMID 19482946›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Zinc-finger directed double-strand breaks within CAG repeat tracts promote repeat instability in human cells.

David Mittelman, Christopher Moye, Jason Morton, Kristen Sykoudis, Yunfu Lin, Dana Carroll, John H Wilson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 92 citations in OpenAlex.

  1. Review
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  9. Review
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  12. Genome engineering and disease modelingWorld journal of stem cells · 2021
    Review
  13. Article
  14. Huntington's Disease: New Frontiers in Therapeutics.Current neurology and neuroscience reports · 2021
    Review
  15. Review
  16. Review
  17. Application of CRISPR-Cas9-Mediated Genome Editing for the Treatment of Myotonic Dystrophy Type 1.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Review
  18. Therapeutic Update on Huntington's Disease: Symptomatic Treatments and Emerging Disease-Modifying Therapies.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David MittelmanVerna and Marrs McLean Department of Biochemistry and Molecular Biology and Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA.
Christopher Moye
Jason Morton
Kristen Sykoudis
Yunfu Lin
Dana Carroll
John H Wilson
Baylor College of Medicine · USUniversity of Utah · US

Funding

RHODOSPIN GENE CORRECTION BY OLIGONUCLEOTIDE TARGETINGR01EY011731 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WILSON, JOHN H · 1997 to 2014
$5.9M
TARGETED RECOMBINATION IN MAMMALIAN CELLSR01GM038219 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI WILSON, JOHN H · 1987 to 2013
$4.3M
VISUAL SCIENCEST32EY007001 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$3.7M
TRAINING PROGRAM IN MOLECULAR ENDOCRINOLOGYT32DK007696 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI MOORE, DAVID D · 1993 to 2012
$2.8M
Chimeric Nucleases for Gene Targeting in DrosophilaR01GM058504 · NIGMS · UNIVERSITY OF UTAH · PI CARROLL, DANA · 1999 to 2003
$919k
THRESHOLD AND NOISE DETERMINATIONS IN RODS AND CONESF32EY007001 · NEI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI HORNSTEIN, ERIC P · 1999 to 2001
$73k
NEI NIH HHS EY11731NEI NIH HHS F32 EY007001NEI NIH HHS R01 EY011731NEI NIH HHS T32 EY007001NEI NIH HHS T-32 EY07001NIDDK NIH HHS DK007696NIDDK NIH HHS T32 DK007696NIGMS NIH HHS GM38219NIGMS NIH HHS GM58504NIGMS NIH HHS R01 GM038219NIGMS NIH HHS R01 GM058504
6 · The paper itself

Abstract

Expanded triplet repeats have been identified as the genetic basis for a growing number of neurological and skeletal disorders. To examine the contribution of double-strand break repair to CAG x CTG repeat instability in mammalian systems, we developed zinc finger nucleases (ZFNs) that recognize and cleave CAG repeat sequences. Engineered ZFNs use a tandem array of zinc fingers, fused to the FokI DNA cleavage domain, to direct double-strand breaks (DSBs) in a site-specific manner. We first determined that the ZFNs cleave CAG repeats in vitro. Then, using our previously described tissue culture assay for identifying modifiers of CAG repeat instability, we found that transfection of ZFN-expression vectors induced up to a 15-fold increase in changes to the CAG repeat in human and rodent cell lines, and that longer repeats were much more sensitive to cleavage than shorter ones. Analysis of individual colonies arising after treatment revealed a spectrum of events consistent with ZFN-induced DSBs and dominated by repeat contractions. We also found that expressing a dominant-negative form of RAD51 in combination with a ZFN, dramatically reduced the effect of the nuclease, suggesting that DSB-induced repeat instability is mediated, in part, through homology directed repair. These studies identify a ZFN as a useful reagent for characterizing the effects of DSBs on CAG repeats in cells.

Indexed as

DNA DamageGenomic InstabilityTrinucleotide RepeatsZinc FingersAnimalsBase SequenceCHO CellsCricetinaeCricetulusDNAHumansMutationDNA

Identifiers

PMID19482946
PMCPMC2701052
OpenAlexW2023646504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.