Evidence map›Paper›PMID 19482916›Full record

ArticlePlant physiology2009

The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a.

Estelle Giraud, Olivier Van Aken, Lois H M Ho, James Whelan

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 278 citations in OpenAlex.

  1. Article
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  4. Review
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  10. Perception and processing of stress signals by plant mitochondria.The Plant journal : for cell and molecular biology · 2024
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  11. ABA and Melatonin: Players on the Same Field?International journal of molecular sciences · 2024
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  13. Redox regulation of meristem quiescence: outside/in.Journal of experimental botany · 2024
    Review
  14. Genome-Wide Identification and Characterization ofPlants (Basel, Switzerland) · 2024
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  15. Review
  16. ATP homeostasis and signaling in plants.Plant communications · 2024
    Review
  17. Article
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  19. Article
  20. Metabolic regulation of quiescence in plants.The Plant journal : for cell and molecular biology · 2023
    Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Estelle GiraudAustralian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Western Australia, Australia.
Olivier Van Aken
Lois H M Ho
James Whelan
ARC Centre of Excellence in Plant Energy Biology · AUAustralian Research Council · AUUniversity of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cells integrate signals from external sources and from organelles to regulate gene expression, referred to as anterograde and retrograde signaling, respectively. Functional characterization of the promoter of ALTERNATIVE OXIDASE1a (AOX1a) from Arabidopsis (Arabidopsis thaliana), a marker for mitochondrial retrograde response, was carried out by testing the ability of the AOX1a promoter to drive expression of the reporter gene GUS. This approach identified a strong repressor element, designated the B element, that was necessary for an increased promoter activity in response to the mitochondrial complex I inhibitor rotenone. This element overlaps with a previously identified potential binding site for the transcription factor ABSCISIC ACID INSENSITIVE4 (ABI4). AOX1a promoter activity was fully derepressed in abi4 mutants and was unresponsive to rotenone. Furthermore, deletion of the B element of the AOX1a promoter resulted in increased GUS staining activity compared to the wild-type promoter in transgenic plants. Binding of the ABI4 transcription factor to this region of the AOX1a promoter was demonstrated by electromobility shift and yeast one-hybrid assays. Analysis of transcript abundance for AOX1a in abi4 mutant lines revealed significantly increased levels of AOX1a mRNA that could not be further induced by rotenone, consistent with the role of ABI4 as a repressor that is derepressed in response to rotenone. These results show that ABI4 plays a central role in mediating mitochondrial retrograde signals to induce the expression of AOX1a. Furthermore, they provide a molecular link between mitochondrial and chloroplast retrograde signaling, as ABI4 has been previously shown to act downstream of at least two chloroplast retrograde signaling pathways.

Indexed as

Gene Expression Regulation, PlantAbscisic AcidAlternative OxidaseArabidopsisArabidopsis ProteinsBinding SitesMitochondriaMitochondrial ProteinsOxidoreductasesPlant Growth RegulatorsPlant ProteinsPromoter Regions, GeneticProtein Interaction MappingRNA, MessengerTranscription FactorsABI4 protein, ArabidopsisAbscisic AcidAlternative OxidaseArabidopsis ProteinsMitochondrial ProteinsOxidoreductasesPlant Growth RegulatorsPlant ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID19482916
PMCPMC2705018
OpenAlexW2169828717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.