Evidence map›Paper›PMID 19481140›Full record

ArticleGene2009

Functional characterization of the murine Tnk1 promoter.

Sarasija Hoare, Kishalay Hoare, Mary K Reinhard, Tammy O Flagg, William Stratford May

Abstract read
In one paragraph

Article in Gene, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Tnk1/Kos1: a novel tumor suppressor.Transactions of the American Clinical and Climatological Association · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sarasija HoareDepartment of Internal Medicine, University of Florida Shands Cancer Center, P.O. Box No: 103633, Gainesville, FL 32610, USA.
Kishalay Hoare
Mary K Reinhard
Tammy O Flagg
William Stratford May
UF Health Cancer CenterUniversity of Florida · USUniversity of Florida Health · US

Funding

IL3 GROWTH FACTOR SIGNALINGR01CA044649 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MAY, WILLIAM STRATFORD · 1987 to 2010
$2.8M
Role of KOS in Regulating Cell GrowthR01CA109150 · NCI · UNIVERSITY OF FLORIDA · PI MAY, WILLIAM STRATFORD · 2004 to 2008
$1.5M
NCI NIH HHS CA109150NCI NIH HHS R01 CA044649NCI NIH HHS R01 CA109150
6 · The paper itself

Abstract

Tnk1/Kos1 is a non-receptor protein tyrosine kinase found to be a tumor suppressor. It negatively regulates cell growth by indirectly suppressing Ras activity. We identified and characterized the critical cis-elements required for Tnk1/Kos1's promoter activity. Results indicate that the murine Tnk1 promoter lacks a conventional TATA, CAAT or initiator element (Inr) but contains multiple transcription start sites. Transcription is initiated by a TATA-like element composed of an AT rich sequence at -30 (30 bp upstream) from the major transcription start site and an Inr-like element that overlaps the multiple start sites. Deletion analysis of the m-Tnk1 promoter reveals the presence of both positive (-25 to -151) and negative (-151 to -1201) regulatory regions. The three GC boxes which bind Sp1 and Sp3 with high affinity, an AP2 site (that overlaps with an AML1 site) and a MED1 site comprise the necessary cis-elements of the proximal promoter required for both constitutive and inducible Tnk1/Kos1 expression. Importantly, results reveal that cellular stress reverses the repression of Tnk1/Kos1 and induces its expression through increased high affinity interactions between nuclear proteins Sp1, Sp3, AP2 and MED1 for the m-Tnk1 promoter. These findings provide a mechanism by which the m-Tnk1 promoter can be dynamically regulated during normal growth.

Indexed as

Promoter Regions, GeneticTranscription Initiation Site3T3 CellsAnimalsBase SequenceMediator Complex Subunit 1MiceMolecular Sequence DataProtein-Tyrosine KinasesRegulatory Sequences, Nucleic AcidSp1 Transcription FactorSp3 Transcription FactorTranscriptional ActivationTranscription Factor AP-2Transcription FactorsKos1 protein, mouseMed1 protein, mouseMediator Complex Subunit 1Protein-Tyrosine KinasesSp1 Transcription FactorSp3 protein, mouseSp3 Transcription FactorTranscription Factor AP-2Transcription Factors

Identifiers

PMID19481140
PMCPMC2732567
OpenAlexW2074605175

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.