Evidence map›Paper›PMID 19481091›Full record

ArticleJournal of molecular biology2009

RNA binding by the brome mosaic virus capsid protein and the regulation of viral RNA accumulation.

Guanghui Yi, Robert C Vaughan, Ian Yarbrough, S Dharmaiah, C Cheng Kao

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Virus Mechanics under Molecular Crowding.The journal of physical chemistry. B · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Guanghui YiDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Robert C Vaughan
Ian Yarbrough
S Dharmaiah
C Cheng Kao
Indiana University Bloomington · US

Funding

In vivo imaging and dynamics of single virus-like particlesR01GM081029 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DRAGNEA, BOGDAN · 2007 to 2011
$1.4M
Molecular Basis for Biological Membrane OrganizationR13GM081929 · NIGMS · KEYSTONE SYMPOSIA · PI ROBERTSON, ANDREW D · 2008 to 2008
$5k
NIGMS NIH HHS GM081929NIGMS NIH HHS R01 GM081029NIGMS NIH HHS R13 GM081929
6 · The paper itself

Abstract

Viral capsid proteins (CPs) can regulate gene expression and encapsulate viral RNAs. Low-level expression of the brome mosaic virus (BMV) CP was found to stimulate viral RNA accumulation, while higher levels inhibited translation and BMV RNA replication. Regulation of translation acts through an RNA element named the B box, which is also critical for the replicase assembly. The BMV CP has also been shown to preferentially bind to an RNA element named SLC that contains the core promoter for genomic minus-strand RNA synthesis. To further elucidate CP interaction with RNA, we used a reversible cross-linking-peptide fingerprinting assay to identify peptides in the capsid that contact the SLC, the B-box RNA, and the encapsidated RNA. Transient expression of three mutations made in residues within or close by the cross-linked peptides partially released the normal inhibition of viral RNA accumulation in agroinfiltrated Nicotiana benthamiana. Interestingly, two of the mutants, R142A and D148A, were found to retain the ability to down-regulate reporter RNA translation. These two mutants formed viral particles in inoculated leaves, but only R142A was able to move systemically in the inoculated plant. The R142A CP was found to have higher affinities for SLC and the B box compared with those of wild-type CP and to alter contacts to the RNA in the virion. These results better define how the BMV CP can interact with RNA and regulate different viral processes.

Indexed as

Amino Acid MotifsAmino Acid SequenceBase SequenceBromovirusCapsid ProteinsMolecular Sequence DataMutationNicotianaProtein ConformationRNA, ViralVirus ReplicationCapsid Proteinscoat protein, Brome mosaic virusRNA, Viral

Identifiers

PMID19481091
PMCPMC2774812
OpenAlexW1982105657

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.