Evidence map›Paper›PMID 19480914›Full record

ArticleMethods in enzymology2009

Chapter 3. Lymphotactin structural dynamics.

Brian F Volkman, Tina Y Liu, Francis C Peterson

Abstract read
In one paragraph

Article in Methods in enzymology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. 'Intelligent' proteins.Cellular and molecular life sciences : CMLS · 2025
    Review
  3. Article
  4. Review
  5. Distinguishing features of fold-switching proteins.Protein science : a publication of the Protein Society · 2023
    Review
  6. Article
  7. Bifurcated Hydrogen Bonds and the Fold Switching of Lymphotactin.The journal of physical chemistry. B · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Fast-folding proteins under stress.Cellular and molecular life sciences : CMLS · 2015
    Review
  14. Article
  15. Chemokine oligomerization in cell signaling and migration.Progress in molecular biology and translational science · 2013
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Dynamic interchanging native states of lymphotactin examined by SNAPP-MS.Journal of the American Society for Mass Spectrometry · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brian F VolkmanDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Tina Y Liu
Francis C Peterson
Medical College of Wisconsin · US

Funding

Conformational duality in the human chemokine Ltn/XCL1R01AI063325 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2005 to 2009
$1.4M
NIAID NIH HHS R01 AI063325
6 · The paper itself

Abstract

Lymphotactin/XCL1, the defining member of the C class of chemokines, undergoes a conformational change that involves the complete restructuring of all stabilizing interactions. Other chemokines are restricted to a single conformation by a pair of conserved disulfide crosslinks, one of which is absent in lymphotactin. This structural interconversion is entirely reversible, and the two-state equilibrium is sensitive to changes in temperature and ionic strength. One species adopts the conserved chemokine fold as a monomer and functions as an agonist for XCR1, the specific G-protein-coupled receptor for lymphotactin. Rearrangement to the other conformation produces a novel four-stranded sheet that dimerizes to form a beta sandwich with high affinity for cell-surface glycosaminoglycans. We developed methods for resolving the two species and investigated the dynamics of human lymphotactin structural interconversion with NMR spectroscopy, heparin affinity chromatography, and time-resolved fluorescence on the wild-type protein and a panel of amino acid-substituted lymphotactin variants. Our results show that the lymphotactin structural rearrangement occurs at a rate of approximately 1/s and that mutation of residues required for glycosaminoglycan binding shifts the conformational equilibrium toward the chemokine-like fold. We speculate that charge repulsion between arginines 23 and 43 destabilizes the chemokine fold and promotes conversion to the novel lymphotactin dimer, whereas binding of chloride or another anion stabilizes the chemokine fold by neutralizing the repulsive effect.

Indexed as

Amino Acid SequenceChemokines, CChromatography, AffinityHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataProtein BindingProtein ConformationChemokines, CXCL1 protein, human

Identifiers

PMID19480914
PMCPMC3686570
OpenAlexW1577699365

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.