Evidence map›Paper›PMID 19475609›Full record

ArticleJournal of medical virology2009

A real-time PCR assay to identify and discriminate among wild-type and vaccine strains of varicella-zoster virus and herpes simplex virus in clinical specimens, and comparison with the clinical diagnoses.

Ruth Harbecke, Michael N Oxman, Beth A Arnold, Charlotte Ip, Gary R Johnson, Myron J Levin, Lawrence D Gelb, Kenneth E Schmader, Stephen E Straus, Hui Wang and 19 more

Registry-linked trialAbstract readEvaluation Study
In one paragraph

Article in Journal of medical virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00007501 (CSP #403 - Trial of Varicella Zoster Vaccine for the Prevention of Herpes Zoster and Its Complications), which is not on this map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00007501 phase3completednot on this map

CSP #403 - Trial of Varicella Zoster Vaccine for the Prevention of Herpes Zoster and Its Complications

TypeinterventionalSponsorUS Department of Veterans AffairsRan1998 to 2011Enrolled38,456ConditionsHerpes Zoster, Postherpetic NeuralgiaArmsVaricella-zoster vaccine, Placebo
3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 71 citations in OpenAlex.

  1. Trial
  2. Persistence of the efficacy of zoster vaccine in the shingles prevention study and the short-term persistence substudy.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
    Trial
  3. Efficacy, safety, and tolerability of herpes zoster vaccine in persons aged 50-59 years.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
    Trial
  4. Article
  5. Article
  6. Status of Herpes Zoster and Herpes Zoster Vaccines in 2023: A position paper.Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Varicella Zoster Virus Encephalitis.Clinical practice and cases in emergency medicine · 2019
    Article
  17. Article
  18. Article
  19. Herpes Zoster in the Older Adult.Infectious disease clinics of North America · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 13 institutions in 1 country.

Ruth HarbeckeDepartment of Veterans Affairs San Diego Healthcare System, San Diego, California, USA.
Michael N Oxman
Beth A Arnold
Charlotte Ip
Gary R Johnson
Myron J Levin
Lawrence D Gelb
Kenneth E Schmader
Stephen E Straus
Hui Wang
Peter F Wright
Constance T Pachucki
Anne A Gershon
Robert D Arbeit
Larry E Davis
Michael S Simberkoff
Adriana Weinberg
Heather M Williams
Carol Cheney
Luba Petrukhin
Katalin G Abraham
Alan Shaw
Susan Manoff
Joseph M Antonello
Tina Green
Yue Wang
Charles Tan
Paul M Keller
Shingles Prevention Study Group
United States Military Academy · USVA San Diego Healthcare System · USUniversity of Colorado Denver · USColumbia University · USDuke Medical Center · USEdward Hines, Jr. VA Hospital · USNational Institute of Allergy and Infectious Diseases · USNew Mexico VA Health Care System · USNew York University · USSt. Louis VA Medical Center · USTufts Medical Center · USVA Connecticut Healthcare System · USVanderbilt University Medical Center · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
Trial Of Varicella Vaccine For The Prevention Of Herpes ZosterZIAAI000856 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MARQUES, ADRIANA R · 2009 to 2016
$1.4M
Varicella Vaccine For The Prevention Of Herpes ZosterZ01AI000856 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MARQUES, ADRIANA R · 2000 to 2008
$285k
Intramural NIH HHS Z01 AI000856NIAID NIH HHS P30 AI036214
6 · The paper itself

Abstract

A real-time PCR assay was developed to identify varicella-zoster virus (VZV) and herpes simplex virus (HSV) DNA in clinical specimens from subjects with suspected herpes zoster (HZ; shingles). Three sets of primers and probes were used in separate PCR reactions to detect and discriminate among wild-type VZV (VZV-WT), Oka vaccine strain VZV (VZV-Oka), and HSV DNA, and the reaction for each virus DNA was multiplexed with primers and probe specific for the human beta-globin gene to assess specimen adequacy. Discrimination of all VZV-WT strains, including Japanese isolates and the Oka parent strain, from VZV-Oka was based upon a single nucleotide polymorphism at position 106262 in ORF 62, resulting in preferential amplification by the homologous primer pair. The assay was highly sensitive and specific for the target virus DNA, and no cross-reactions were detected with any other infectious agent. With the PCR assay as the gold standard, the sensitivity of virus culture was 53% for VZV and 77% for HSV. There was 92% agreement between the clinical diagnosis of HZ by the Clinical Evaluation Committee and the PCR assay results.

Indexed as

Chickenpox VaccineHerpes Simplex Virus Vaccinesbeta-GlobinsDiagnosis, DifferentialDNA PrimersHerpes SimplexHerpesvirus 3, HumanHerpes ZosterHumansPolymerase Chain ReactionPolymorphism, Single NucleotideReference StandardsSensitivity and SpecificitySimplexvirusVaccinesbeta-GlobinsChickenpox VaccineDNA PrimersHerpes Simplex Virus VaccinesVaccines

Identifiers

PMID19475609
PMCPMC4217208
OpenAlexW2153434009

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.