ArticleNeuroinformatics2009
Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox.
Article in Neuroinformatics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Neuronal excitability and parameter variability in the Hodgkin-Huxley model.PLoS computational biology · 2026Article
- ElecFeX is a user-friendly toolbox for efficient feature extraction from single-cell electrophysiological recordings.Cell reports methods · 2024Article
- A primary sensory cortical interareal feedforward inhibitory circuit for tacto-visual integration.Nature communications · 2024Article
- Functional and structural features of L2/3 pyramidal cells continuously covary with pial depth in mouse visual cortex.Cerebral cortex (New York, N.Y. : 1991) · 2023Article
- Article
- Integrating the Allen Brain Institute Cell Types Database into Automated Neuroscience Workflow.Neuroinformatics · 2017Article
- Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.Journal of neurophysiology · 2017Article
- Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges.Frontiers in neuroscience · 2016Review
- Dendritic distributions of I h channels in experimentally-derived multi-compartment models of oriens-lacunosum/moleculare (O-LM) hippocampal interneurons.Frontiers in synaptic neuroscience · 2015Article
- NeuroManager: a workflow analysis based simulation management engine for computational neuroscience.Frontiers in neuroinformatics · 2015Article
- Article
- High prevalence of multistability of rest states and bursting in a database of a model neuron.PLoS computational biology · 2013Article
- The virtual brain integrates computational modeling and multimodal neuroimaging.Brain connectivity · 2013Article
- Excitation of rat cerebellar Golgi cells by ethanol: further characterization of the mechanism.Alcoholism, clinical and experimental research · 2012Article
- Animal-to-animal variability of connection strength in the leech heartbeat central pattern generator.Journal of neurophysiology · 2012Article
- Biological databases for behavioral neurobiology.International review of neurobiology · 2012Review
- A database of computational models of a half-center oscillator for analyzing how neuronal parameters influence network activity.Journal of biological physics · 2011Article
- Model calcium sensors for network homeostasis: sensor and readout parameter analysis from a database of model neuronal networks.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2010Article
- Review of papers describing neuroinformatics software.Neuroinformatics · 2009Article
- Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
Neuronal recordings and computer simulations produce ever growing amounts of data, impeding conventional analysis methods from keeping pace. Such large datasets can be automatically analyzed by taking advantage of the well-established relational database paradigm. Raw electrophysiology data can be entered into a database by extracting its interesting characteristics (e.g., firing rate). Compared to storing the raw data directly, this database representation is several orders of magnitude higher efficient in storage space and processing time. Using two large electrophysiology recording and simulation datasets, we demonstrate that the database can be queried, transformed and analyzed. This process is relatively simple and easy to learn because it takes place entirely in Matlab, using our database analysis toolbox, PANDORA. It is capable of acquiring data from common recording and simulation platforms and exchanging data with external database engines and other analysis toolboxes, which make analysis simpler and highly interoperable. PANDORA is available to be freely used and modified because it is open-source (http://software.incf.org/software/pandora/home).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.