Evidence map›Paper›PMID 19474297›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses.

Donna K Slonim, Keiko Koide, Kirby L Johnson, Umadevi Tantravahi, Janet M Cowan, Zina Jarrah, Diana W Bianchi

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 117 citations in OpenAlex.

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  8. Review
  9. The Role of Oxidative Stress in Trisomy 21 Phenotype.Cellular and molecular neurobiology · 2023
    Review
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  12. Article
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  15. Article
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  20. Observational

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Donna K SlonimDepartment of Computer Science, Tufts University, Medford, MA 02155, USA.
Keiko Koide
Kirby L Johnson
Umadevi Tantravahi
Janet M Cowan
Zina Jarrah
Diana W Bianchi
Tufts Medical Center · USTufts Children's Hospital · USTufts University · USWomen & Infants Hospital of Rhode Island · US

Funding

Feto-Maternal DNA/RNA Trafficking:Biology &ApplicationsR01HD042053 · NICHD · TUFTS MEDICAL CENTER · PI BIANCHI, DIANA W. · 2004 to 2013
$3.2M
Translational Bioinformatics for Human Developmental GenomicsR01HD058880 · NICHD · TUFTS UNIVERSITY MEDFORD · PI SLONIM, DONNA K. · 2009 to 2012
$1.3M
NICHD NIH HHS R01 HD042053NICHD NIH HHS R01HD042053-06NICHD NIH HHS R01 HD058880NICHD NIH HHS R01HD058880-01
6 · The paper itself

Abstract

To characterize the differences between second trimester Down syndrome (DS) and euploid fetuses, we used Affymetrix microarrays to compare gene expression in uncultured amniotic fluid supernatant samples. Functional pathway analysis highlighted the importance of oxidative stress, ion transport, and G protein signaling in the DS fetuses. Further evidence supporting these results was derived by correlating the observed gene expression patterns to those of small molecule drugs via the Connectivity Map. Our results suggest that there are secondary adverse consequences of DS evident in the second trimester, leading to testable hypotheses about possible antenatal therapy for DS.

Indexed as

Gene Expression ProfilingOxidative StressAmniotic FluidDown SyndromeFemaleFetusHumansOligonucleotide Array Sequence AnalysisPregnancy

Identifiers

PMID19474297
PMCPMC2687148
OpenAlexW2027647323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.