Evidence map›Paper›PMID 19470714›Full record

ArticleJournal of biomolecular screening2009

Buffer optimization of thermal melt assays of Plasmodium proteins for detection of small-molecule ligands.

Gregory J Crowther, Alberto J Napuli, Andrew P Thomas, Diana J Chung, Kuzma V Kovzun, David J Leibly, Lisa J Castaneda, Janhavi Bhandari, Christopher J Damman, Raymond Hui and 6 more

Abstract read
In one paragraph

Article in Journal of biomolecular screening, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Bumped kinase inhibitor 1369 is effective against Cystoisospora suis in vivo and in vitro.International journal for parasitology. Drugs and drug resistance · 2019
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Optimization of protein buffer cocktails using Thermofluor.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  12. Article
  13. Article
  14. Screening a fragment cocktail library using ultrafiltration.Analytical and bioanalytical chemistry · 2011
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Gregory J CrowtherDepartment of Medicine, University of Washington, Seattle, WA 98195-7185, USA. crowther@u.washington.edu
Alberto J Napuli
Andrew P Thomas
Diana J Chung
Kuzma V Kovzun
David J Leibly
Lisa J Castaneda
Janhavi Bhandari
Christopher J Damman
Raymond Hui
Wim G J Hol
Frederick S Buckner
Christophe L M J Verlinde
Zhongsheng Zhang
Erkang Fan
Wesley C van Voorhis

Funding

Structural Genomics of Pathogenic ProtozoaP50GM064655 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2001 to 2004
$25.3M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIGMS NIH HHS GM64655NIGMS NIH HHS P50 GM064655
6 · The paper itself

Abstract

In the past decade, thermal melt/thermal shift assays have become a common tool for identifying ligands and other factors that stabilize specific proteins. Increased stability is indicated by an increase in the protein's melting temperature (Tm). In optimizing the assays for subsequent screening of compound libraries, it is important to minimize the variability of Tm measurements so as to maximize the assay's ability to detect potential ligands. The authors present an investigation of Tm variability in recombinant proteins from Plasmodium parasites. Ligands of Plasmodium proteins are particularly interesting as potential starting points for drugs for malaria, and new drugs are urgently needed. A single standard buffer (100 mM HEPES [pH 7.5], 150 mM NaCl) permitted estimation of Tm for 58 of 61 Plasmodium proteins tested. However, with several proteins, Tm could not be measured with a consistency suitable for high-throughput screening unless alternative protein-specific buffers were employed. The authors conclude that buffer optimization to minimize variability in Tm measurements increases the success of thermal melt screens involving proteins for which a standard buffer is suboptimal.

Indexed as

Transition TemperatureAnimalsBiological AssayBuffersLigandsPlasmodiumProtozoan ProteinsSmall Molecule LibrariesBuffersLigandsProtozoan ProteinsSmall Molecule Libraries

Identifiers

PMID19470714
PMCPMC2819745

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.