ArticleBMC research notes2009
Orthology between genomes of Brachypodium, wheat and rice.
Article in BMC research notes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
27 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.
- Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Pooled it
- Cold-inducible promoter-driven knockdown ofPlant direct · 2022Article
- Meta-QTLs, ortho-MQTLs and candidate genes for the traits contributing to salinity stress tolerance in common wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Meta-QTLs, ortho-MQTLs, and candidate genes for thermotolerance in wheat (Molecular breeding : new strategies in plant improvement · 2021Article
- Meta-QTLs, ortho-MQTLs and candidate genes for nitrogen use efficiency and root system architecture in bread wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- DCT4-A New Member of the Dicarboxylate Transporter Family in C4 Grasses.Genome biology and evolution · 2021Article
- Identification of lncRNAs involved in wheat tillering development in two pairs of near-isogenic lines.Functional & integrative genomics · 2020Article
- Further studies on sugar transporter (SWEET) genes in wheat (Triticum aestivum L.).Molecular biology reports · 2019Article
- Reconstruction of evolutionary trajectories of chromosomes unraveled independent genomic repatterning between Triticeae and Brachypodium.BMC genomics · 2019Article
- Genome-Wide Association Analysis of Grain Yield-Associated Traits in a Pan-European Barley Cultivar Collection.The plant genome · 2018Article
- Identification, Molecular Cloning, and Functional Characterization of a Wheat UDP-Glucosyltransferase Involved in Resistance to Fusarium Head Blight and to Mycotoxin Accumulation.Frontiers in plant science · 2018Article
- Comparative mapping of powdery mildew resistance gene Pm21 and functional characterization of resistance-related genes in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- The α-gliadin genes from Brachypodium distachyon L. provide evidence for a significant gap in the current genome assembly.Functional & integrative genomics · 2014Article
- Molecular characterisation and evolution of HMW glutenin subunit genes in Brachypodium distachyon L.Journal of applied genetics · 2014Article
- Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Genome-wide landscape of alternative splicing events in Brachypodium distachyon.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013Article
- Comparative genome analysis between Agrostis stolonifera and members of the Pooideae subfamily, including Brachypodium distachyon.PloS one · 2013Article
- Molecular characterization of LMW-GS genes in Brachypodium distachyon L. reveals highly conserved Glu-3 loci in Triticum and related species.BMC plant biology · 2012Article
- Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.BMC plant biology · 2012Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundIn the past, rice genome served as a good model for studies involving comparative genomics of grass species. More recently, however, Brachypodium distachyon genome has emerged as a better model system for genomes of temperate cereals including wheat. During the present study, Brachypodium EST contigs were utilized to resolve orthologous relationships among the genomes of Brachypodium, wheat and rice.
findingsComparative sequence analysis of 3,818 Brachypodium EST (bEST) contigs and 3,792 physically mapped wheat EST (wEST) contigs revealed that as many as 449 bEST contigs were orthologous to 1,154 wEST loci that were bin-mapped on all the 21 wheat chromosomes. Similarly 743 bEST contigs were orthologous to specific rice genome sequences distributed on all the 12 rice chromosomes. As many as 183 bEST contigs were orthologous to both wheat and rice genome sequences, which harbored as many as 17 SSRs conserved across the three species. Primers developed for 12 of these 17 conserved SSRs were used for a wet-lab experiment, which resolved relatively high level of conservation among the genomes of Brachypodium, wheat and rice.
conclusionThe present study confirmed that Brachypodium is a better model than rice for analysis of the genomes of temperate cereals like wheat and barley. The whole genome sequence of Brachypodium, which should become available in the near future, will further facilitate greatly the studies involving comparative genomics of cereals.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.