Evidence map›Paper›PMID 19468320›Full record

ReviewInternational journal of molecular sciences2009

Early events, kinetic intermediates and the mechanism of protein folding in cytochrome C.

Robert A Goldbeck, Eefei Chen, David S Kliger

Erratum issuedOpen access · goldAbstract readReview
In one paragraph

Review in International journal of molecular sciences, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Dramatic Shape Changes Occur as CytochromeThe journal of physical chemistry. B · 2020
    Article
  4. Heterogeneous folding and stretched kinetics.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Review
  6. Review
  7. On the preservation of non-covalent protein complexes during electrospray ionization.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Robert A GoldbeckDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, California 95046, USA.
Eefei ChenDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, California 95046, USA.
David S KligerDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, California 95046, USA.
University of California, Santa Cruz · US

Funding

TIME-RESOLVED MAGNETIC CIRCULAR DICHROISMR01EB002056 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KLIGER, DAVID S. · 2003 to 2007
$1.5M
NIBIB NIH HHS EB02056
6 · The paper itself

Abstract

Kinetic studies of the early events in cytochrome c folding are reviewed with a focus on the evidence for folding intermediates on the submillisecond timescale. Evidence from time-resolved absorption, circular dichroism, magnetic circular dichroism, fluorescence energy and electron transfer, small-angle X-ray scattering and amide hydrogen exchange studies on the t < or = 1 ms timescale reveals a picture of cytochrome c folding that starts with the approximately 1-micros conformational diffusion dynamics of the unfolded chains. A fractional population of the unfolded chains collapses on the 1 - 100 micros timescale to a compact intermediate I(C) containing some native-like secondary structure. Although the existence and nature of I(C) as a discrete folding intermediate remains controversial, there is extensive high time-resolution kinetic evidence for the rapid formation of I(C) as a true intermediate, i.e., a metastable state separated from the unfolded state by a discrete free energy barrier. Final folding to the native state takes place on millisecond and longer timescales, depending on the presence of kinetic traps such as heme misligation and proline mis-isomerization. The high folding rates observed in equilibrium molten globule models suggest that I(C) may be a productive folding intermediate. Whether it is an obligatory step on the pathway to the high free energy barrier associated with millisecond timescale folding to the native state, however, remains to be determined.

Indexed as

Circular DichroismCytochromes cKineticsProtein FoldingProtein Structure, SecondaryProtein UnfoldingThermodynamicsTime FactorsCytochromes camide hydrogen exchangeCollapsed intermediateconformational diffusiondisordered tertiary structurefar-UV circular dichroismheme misligationmagnetic circular dichroismmolten globulesecondary structure formationsmall-angle X-ray scatteringthermophilesthree-state pathwaytime-resolved spectroscopyTrp59 fluorescenceunfolded chains

Identifiers

PMID19468320
PMCPMC2680628
OpenAlexW2090970108

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.