Evidence map›Paper›PMID 19467554›Full record

ArticleVirology2009

An interdomain RNA binding site on the hepadnaviral polymerase that is essential for reverse transcription.

Matthew P Badtke, Irfan Khan, Feng Cao, Jianming Hu, John E Tavis

Abstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Efficacy andAntimicrobial agents and chemotherapy · 2025
    Article
  3. Article
  4. Article
  5. Recent Advances in Hepatitis B Treatment.Pharmaceuticals (Basel, Switzerland) · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Hepadnavirus Genome Replication and Persistence.Cold Spring Harbor perspectives in medicine · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthew P BadtkeDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, 1100 S. Grand Blvd., St. Louis, MO 63104, USA.
Irfan Khan
Feng Cao
Jianming Hu
John E Tavis
Saint Louis University · USPennsylvania State University · US

Funding

MECHANISMS OF HEPADNAVIRUS ASSEMBLY AND REPLICATIONR01AI043453 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HU, JIANMING · 1999 to 2017
$5.9M
Mechanisms of Hepadnavirus Assembly and ReplicationR37AI043453 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Jianming Hu · 2018 to 2026
$3.8M
Analysis of the hepadnaviral reverse transcriptaseR01AI038447 · NIAID · SAINT LOUIS UNIVERSITY · PI TAVIS, JOHN E · 2002 to 2006
$1.3M
HEPADNAVIRAL REVERSE TRANSCRIPTIONR29AI038447 · NIAID · SAINT LOUIS UNIVERSITY · PI TAVIS, JOHN E · 1996 to 2000
$111k
NIAID NIH HHS AI043453NIAID NIH HHS AI38447NIAID NIH HHS R01 AI038447NIAID NIH HHS R01 AI043453NIAID NIH HHS R29 AI038447NIAID NIH HHS R37 AI043453
6 · The paper itself

Abstract

The T3 motif on the duck hepatitis B virus reverse transcriptase (P) is proposed to be a binding site essential for viral replication, but its ligand and roles in DNA synthesis are unknown. Here, we found that T3 is needed for P to bind the viral RNA, the first step in DNA synthesis. A second motif, RT-1, was predicted to assist T3. T3 and RT-1 appear to form a composite RNA binding site because mutating T3 and RT-1 had similar effects on RNA binding, exposure of antibody epitopes on P, and DNA synthesis. The T3 and RT-1 motifs bound RNA non-specifically, yet they were essential for specific interactions between P and the viral RNA. This implies that specificity for the viral RNA is provided by a post-binding step. The T3:RT-1 motifs are conserved with the human hepatitis B virus and may be an attractive target for novel antiviral drug development.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsBinding SitesHepadnaviridaeHepatitis B virusHepatitis B Virus, DuckHumansModels, BiologicalModels, MolecularMolecular ChaperonesMolecular Sequence DataReverse TranscriptionRNA-Directed DNA PolymeraseRNA, ViralSequence Homology, Amino AcidMolecular ChaperonesRNA-Directed DNA PolymeraseRNA, Viral

Identifiers

PMID19467554
PMCPMC2737686
OpenAlexW2026890337

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.