Evidence map›Paper›PMID 19467240›Full record

ArticleJournal of molecular biology2009

A far-upstream Oct-1 motif regulates cytokine-induced transcription of the human inducible nitric oxide synthase gene.

Kyung Soo Park, Zhong Guo, Lifang Shao, Qiang Du, David A Geller

Abstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Tailoring the models of transcription.International journal of molecular sciences · 2013
    Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kyung Soo ParkDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Zhong Guo
Lifang Shao
Qiang Du
David A Geller
University of Pittsburgh · US

Funding

YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI BLOOD, PHILIP D · 1990 to 2011
$22.0M
REGULATION OF THE HUMAN INOS GENE IN SEPSIS AND TRAUMAR01GM052021 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GELLER, DAVID A · 2000 to 2007
$2.1M
L-Arginine/NO in Liver Transplant Preservation InjuryR01DK062313 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GELLER, DAVID A · 2005 to 2008
$1.1M
REGULATION OF THE HUMAN INOS GENE IN SEPSIS AND TRAUMAR29GM052021 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GELLER, DAVID A · 1995 to 1999
–
NCRR NIH HHS P41 RR006009NIDDK NIH HHS DK62313NIDDK NIH HHS R01 DK062313NIGMS NIH HHS GM52021NIGMS NIH HHS R01 GM052021NIGMS NIH HHS R29 GM052021
6 · The paper itself

Abstract

Transcriptional regulation of the human inducible nitric oxide synthase (hiNOS) gene is highly complex and requires an orchestrated flow of positive and negative transcription factors that bind to specific cis-acting upstream response elements. Very little specific information exists about the far-upstream region of the hiNOS gene. Oct-1 protein belongs to the Pit-Oct-Unc domain transcription factor family and is constitutively expressed in all dividing cells. It is essential for proliferation, differentiation, and other key cell processes. However, the role of Oct-1 in regulating hiNOS gene expression has not been reported. In this work, the octamer sequence 5'-ATGCAAAT-3' at -10.2 kb in the hiNOS promoter was identified as high-affinity Oct-1 binding by electrophoretic mobility shift assay in vitro and chromatin immunoprecipitation assay in vivo. Mutation of Oct-1 motif at -10.2 kb in the hiNOS promoter decreased cytokine-induced hiNOS promoter activity by 40%. Cytokine-induced hiNOS promoter activity was also significantly reduced by Oct-1 small interfering RNA targeting. Overexpression of Oct-1 increased cytokine-induced hiNOS protein expression in primary human hepatocytes. Furthermore, the Oct-1 motif at -10.2 kb of the hiNOS promoter conferred increased transcriptional activity to the heterologous thymidine kinase promoter irrespective of cytokine induction. Taken together, this work identifies a far-upstream functional Oct-1 enhancer motif at -10.2 kb in the hiNOS promoter that regulates cytokine-induced hiNOS gene transcription and further underscores tight control mechanisms regulating the expression of the hiNOS gene.

Indexed as

Amino Acid MotifsCells, CulturedChromatin ImmunoprecipitationCytokinesElectrophoretic Mobility Shift AssayGene Expression RegulationHepatocytesHumansMutationNitric Oxide Synthase Type IIOctamer Transcription Factor-1Promoter Regions, GeneticProtein BindingRNA, Small InterferingThymidine KinaseTranscriptional ActivationCytokinesNitric Oxide Synthase Type IINOS2 protein, humanOctamer Transcription Factor-1RNA, Small InterferingThymidine Kinase

Identifiers

PMID19467240
PMCPMC2747512
OpenAlexW2019539691

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.