Evidence map›Paper›PMID 19465933›Full record

ArticleNature chemical biology2009

Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin.

Aimee Shen, Patrick J Lupardus, Victoria E Albrow, Andrew Guzzetta, James C Powers, K Christopher Garcia, Matthew Bogyo

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. ThemBio · 2022
    Article
  10. Review
  11. Article
  12. Article
  13. TheScience signaling · 2020
    Article
  14. TheFrontiers in microbiology · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aimee ShenDepartment of Pathology, and Howard Hughes Medical Institute, Stanford School of Medicine, Stanford,California, USA.
Patrick J Lupardus
Victoria E Albrow
Andrew Guzzetta
James C Powers
K Christopher Garcia
Matthew Bogyo
Howard Hughes Medical Institute · USGeorgia Institute of Technology · US

Funding

CORE 6 : PROJECT LEADERSHIP AND ADMINISTRATIONU54RR020843 · NCRR · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2004 to 2009
$19.1M
Small Molecule Imaging of Protease ActivityR01EB005011 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2005 to 2013
$3.0M
Howard Hughes Medical InstituteNCRR NIH HHS U54 RR020843NCRR NIH HHS U54-RR020843NIBIB NIH HHS R01 EB005011
6 · The paper itself

Abstract

MARTX toxins modulate the virulence of a number of Gram-negative Vibrio species. This family of toxins is defined by the presence of a cysteine protease domain (CPD), which proteolytically activates the Vibrio cholerae MARTX toxin. Although recent structural studies of the CPD have uncovered a new allosteric activation mechanism, the mechanism of CPD substrate recognition or toxin processing is unknown. Here we show that interdomain cleavage of MARTXVc enhances effector domain function. We also identify the first small-molecule inhibitors of this protease domain and present the 2.35-A structure of the CPD bound to one of these inhibitors. This structure, coupled with biochemical and mutational studies of the toxin, reveals the molecular basis of CPD substrate specificity and underscores the evolutionary relationship between the CPD and the clan CD caspase proteases. These studies are likely to prove valuable for devising new antitoxin strategies for a number of bacterial pathogens.

Indexed as

Allosteric RegulationAmino Acid SequenceBlotting, WesternCatalytic DomainCholera ToxinCrystallography, X-RayCysteine ProteasesCysteine Proteinase InhibitorsEnzyme ActivationModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, SecondarySequence AlignmentSpectroscopy, Fourier Transform InfraredSubstrate SpecificityCholera ToxinCysteine ProteasesCysteine Proteinase Inhibitors

Identifiers

PMID19465933
PMCPMC2783333
OpenAlexW1978509310

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.