Evidence map›Paper›PMID 19465926›Full record

ArticleNature biotechnology2009

Genome sequence of the recombinant protein production host Pichia pastoris.

Kristof De Schutter, Yao-Cheng Lin, Petra Tiels, Annelies Van Hecke, Sascha Glinka, Jacqueline Weber-Lehmann, Pierre Rouzé, Yves Van de Peer, Nico Callewaert

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 224 papers.

0numbers the graph read from it
0cells of the map it votes in
224citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

224 citing papers in PubMed, 537 citations in OpenAlex.

  1. Article
  2. Review
  3. Metabolic engineering ofApplied and environmental microbiology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Genome-Wide Landscape of Position Effect Variegation inJournal of fungi (Basel, Switzerland) · 2026
    Article
  8. Pichia pastoris RNA-Sequencing and Data Analysis.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  9. Article
  10. Article
  11. Classical Genetics of Pichia pastoris.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  12. A Brief History of the Pichia pastoris Expression System.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  13. Article
  14. Yeast Midas' touch: recent advances in the valorisation of methanol by yeasts.World journal of microbiology & biotechnology · 2025
    Review
  15. Therapeutic Promise and Biotechnological Prospects ofInternational journal of molecular sciences · 2025
    Review
  16. Synthetic and systems biotechnology · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article

164 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Kristof De SchutterUnit for Molecular Glycobiology, Department for Molecular Biomedical Research, VIB, Ghent-Zwijnaarde, Belgium.
Yao-Cheng Lin
Petra Tiels
Annelies Van Hecke
Sascha Glinka
Jacqueline Weber-Lehmann
Pierre Rouzé
Yves Van de Peer
Nico Callewaert
Ghent University · BEEurofins (Germany) · DEVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The methylotrophic yeast Pichia pastoris is widely used for the production of proteins and as a model organism for studying peroxisomal biogenesis and methanol assimilation. P. pastoris strains capable of human-type N-glycosylation are now available, which increases the utility of this organism for biopharmaceutical production. Despite its biotechnological importance, relatively few genetic tools or engineered strains have been generated for P. pastoris. To facilitate progress in these areas, we present the 9.43 Mbp genomic sequence of the GS115 strain of P. pastoris. We also provide manually curated annotation for its 5,313 protein-coding genes.

Indexed as

Genome, FungalBase SequenceCodonGenes, FungalMetabolic Networks and PathwaysMolecular Sequence DataPhylogenyPichiaRecombinant ProteinsRNA, TransferSequence Analysis, DNACodonRecombinant ProteinsRNA, Transfer

Identifiers

PMID19465926
OpenAlexW2098693002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.