Evidence map›Paper›PMID 19465771›Full record

ArticleActa crystallographica. Section D, Biological crystallography2009

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.

Paul D Adams, Marat Mustyakimov, Pavel V Afonine, Paul Langan

Abstract readComparative Study
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed.

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  6. Improved joint X-ray and neutron refinement procedure in Phenix.Acta crystallographica. Section D, Structural biology · 2023
    Article
  7. Neutron crystallographic refinement with REFMAC5 from the CCP4 suite.Acta crystallographica. Section D, Structural biology · 2023
    Article
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  20. Single-Component and Two-ComponentApplied and environmental microbiology · 2021
    Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Paul D AdamsLawrence Berkeley National Laboratory, CA 94720, USA.
Marat Mustyakimov
Pavel V Afonine
Paul Langan

Funding

PROJECT 5 - DUKE - STRUCTURE VALIDATION AND IMPROVEMENT FOR PROTEINS AND N. ACIDSP01GM063210 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ADAMS, PAUL DAVID · 2001 to 2021
$33.5M
Computational Tools for Neutron Protein CrystallographyR01GM071939 · NIGMS · UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB · PI COATES, LEIGHTON · 2004 to 2019
$4.3M
NIGMS NIH HHS 1R01GM071939-01NIGMS NIH HHS P01 GM063210NIGMS NIH HHS R01 GM071939
6 · The paper itself

Abstract

X-ray and neutron crystallographic techniques provide complementary information on the structure and function of biological macromolecules. X-ray and neutron (XN) crystallographic data have been combined in a joint structure-refinement procedure that has been developed using recent advances in modern computational methodologies, including cross-validated maximum-likelihood target functions with gradient-based optimization and simulated annealing. The XN approach for complete (including hydrogen) macromolecular structure analysis provides more accurate and complete structures, as demonstrated for diisopropyl fluorophosphatase, photoactive yellow protein and human aldose reductase. Furthermore, this method has several practical advantages, including the easier determination of the orientation of water molecules, hydroxyl groups and some amino-acid side chains.

Indexed as

Escherichia coliBacterial ProteinsComputational BiologyCrystallography, X-RayFeasibility StudiesMacromolecular SubstancesModels, TheoreticalNeutron DiffractionPhosphoric Triester HydrolasesPhotoreceptors, MicrobialProtein ConformationReproducibility of ResultsTemperatureBacterial Proteinsdiisopropyl-fluorophosphataseMacromolecular SubstancesPhosphoric Triester Hydrolasesphotoactive yellow protein, BacteriaPhotoreceptors, Microbial

Identifiers

PMID19465771
PMCPMC2685734

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.