Evidence map›Paper›PMID 19465526›Full record

ArticleApplied and environmental microbiology2009

Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.

Sabrina Schübbe, Timothy J Williams, Gary Xie, Hajnalka E Kiss, Thomas S Brettin, Diego Martinez, Christian A Ross, Dirk Schüler, B Lea Cox, Kenneth H Nealson and 1 more

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 109 citations in OpenAlex.

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  15. Complete Genome Sequence ofGenome announcements · 2017
    Article
  16. Origin of microbial biomineralization and magnetotaxis during the Archean.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Sabrina SchübbeUniversity of Nevada, Las Vegas, School of Life Sciences, 4505 S. Maryland Parkway, Las Vegas, NV 89154, USA.
Timothy J Williams
Gary Xie
Hajnalka E Kiss
Thomas S Brettin
Diego Martinez
Christian A Ross
Dirk Schüler
B Lea Cox
Kenneth H Nealson
Dennis A Bazylinski
Joint Genome Institute · USUniversity of Nevada, Las Vegas · USUniversity of Southern California · USLos Alamos National Laboratory · USLudwig-Maximilians-Universität München · DEUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The marine bacterium strain MC-1 is a member of the alpha subgroup of the proteobacteria that contains the magnetotactic cocci and was the first member of this group to be cultured axenically. The magnetotactic cocci are not closely related to any other known alphaproteobacteria and are only distantly related to other magnetotactic bacteria. The genome of MC-1 contains an extensive (102 kb) magnetosome island that includes numerous genes that are conserved among all known magnetotactic bacteria, as well as some genes that are unique. Interestingly, certain genes that encode proteins considered to be important in magnetosome assembly (mamJ and mamW) are absent from the genome of MC-1. Magnetotactic cocci exhibit polar magneto-aerotaxis, and the MC-1 genome contains a relatively large number of identified chemotaxis genes. Although MC-1 is capable of both autotrophic and heterotrophic growth, it does not appear to be metabolically versatile, with heterotrophic growth confined to the utilization of acetate. Central carbon metabolism is encoded by genes for the citric acid cycle (oxidative and reductive), glycolysis, and gluconeogenesis. The genome also reveals the presence or absence of specific genes involved in the nitrogen, sulfur, iron, and phosphate metabolism of MC-1, allowing us to infer the presence or absence of specific biochemical pathways in strain MC-1. The pathways inferred from the MC-1 genome provide important information regarding central metabolism in this strain that could provide insights useful for the isolation and cultivation of new magnetotactic bacterial strains, in particular strains of other magnetotactic cocci.

Indexed as

Genome, BacterialSequence Analysis, DNAAcetatesAlphaproteobacteriaDNA, BacterialGenes, BacterialGenomic IslandsLocomotionMagneticsMetabolic Networks and PathwaysMolecular Sequence DataAcetatesDNA, Bacterial

Identifiers

PMID19465526
PMCPMC2708431
OpenAlexW2117156216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.