Evidence map›Paper›PMID 19464996›Full record

ArticleArchives of biochemistry and biophysics2009

Distal end of 105-125 loop--a putative reductase binding domain of phthalate dioxygenase.

Michael Tarasev, Sailaja Pullela, David P Ballou

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael TarasevDept. of Biological Chemistry, University of Michigan, 1150 W. Medical Center Dr., MSRBIII, Ann Arbor, MI 48109-0606, USA.
Sailaja Pullela
David P Ballou
University of Michigan–Ann Arbor · US

Funding

BIOLOGICAL OXIDATION MECHANISMSR01GM011106 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALLOU, DAVID P · 1985 to 2005
$2.7M
RAPID KINETICS STUDY OF BIOLOGICAL OXYGENASESR01GM020877 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALLOU, DAVID P · 1985 to 2009
$2.2M
RAPID KINETIC &OTHER STUDIES OF BIOLOGICAL OXYGENASESR37GM020877 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALLOU, DAVID P · 1992 to 2002
$637k
MECHANISMS OF MEMBRANE FUSIONF32GM020877 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HODGES, ALEX R · 2001 to 2003
$91k
NIGMS NIH HHS F32 GM020877NIGMS NIH HHS GM20877NIGMS NIH HHS R01 GM011106NIGMS NIH HHS R01 GM020877NIGMS NIH HHS R37 GM020877
6 · The paper itself

Abstract

The phthalate dioxygenase system consists of the dioxygenase, PDO, which contains a Rieske [2Fe-2S] center and a Fe(II)-mononuclear center, and the reductase, PDR. Involvement of the distal end of the 105-125 loop of PDO in its interaction with PDR was tested by substituting charged residues in the loop with alanines and by replacing the conserved tryptophan-94. Compared to wild-type PDO, all variants had lower catalytic activity and the Rieske centers were reduced more slowly by reduced PDR. The rates of oxidation of the Rieske centers by oxygen, which represent electron transfer between the Rieske and mononuclear centers, were essentially unaffected. These results suggest that positively charged residues of the distal end of the 105-125 loop are collectively involved in PDR binding with the PDO. Contrary to expectations, Trp94 variants were not directly involved in electron transfer between PDR and PDO. The tryptophan appears to have mainly a structural role, apparently preserving the hydrophilic environment of the Rieske center.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBase SequenceBinding SitesBurkholderia cepaciaDNA, BacterialDNA PrimersElectron TransportElectron Transport Complex IIIKineticsModels, MolecularMolecular Sequence DataMultienzyme ComplexesMutagenesis, Site-DirectedOxidoreductasesOxygenasesDNA, BacterialDNA PrimersElectron Transport Complex IIIMultienzyme ComplexesOxidoreductasesOxygenasesphthalate dioxygenasephthalate oxygenase reductaseRecombinant ProteinsRieske iron-sulfur protein

Identifiers

PMID19464996
PMCPMC2739098
OpenAlexW2071707825

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.