Evidence map›Paper›PMID 19461886›Full record

ArticlePLoS genetics2009

Adaptive variation regulates the expression of the human SGK1 gene in response to stress.

Francesca Luca, Sonal Kashyap, Catherine Southard, Min Zou, David Witonsky, Anna Di Rienzo, Suzanne D Conzen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Role for the kinase SGK1 in stress, depression, and glucocorticoid effects on hippocampal neurogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Implication of Spiritual Network Support System in Epigenomic Modulation and Health Trajectory.International journal of environmental research and public health · 2019
    Review
  10. Article
  11. Article
  12. Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Association ofFrontiers in genetics · 2019
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Human social genomics.PLoS genetics · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Francesca LucaDepartment of Human Genetics, The University of Chicago, Chicago, Illinois, USA.
Sonal Kashyap
Catherine Southard
Min Zou
David Witonsky
Anna Di Rienzo
Suzanne D Conzen
University of Chicago · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
Variation in Hormone and xenobiotic metabolizing enzyme genes and breast cancerP50CA125183 · NCI · UNIVERSITY OF CHICAGO · PI COX, NANCY · 2006 to 2010
$11.3M
POPULATION AND EVOLUTIONARY GENETICS OF NIDDMIR01DK056670 · NIDDK · UNIVERSITY OF CHICAGO · PI DI RIENZO, ANNA · 2001 to 2010
$3.2M
Glucocorticoid receptor-mediated survival signaling in breast cancerR01CA089208 · NCI · UNIVERSITY OF CHICAGO · PI CONZEN, SUZANNE DANIELA · 2002 to 2016
$3.0M
Medical Research Council G0000934NCI NIH HHS P30 CA014599NCI NIH HHS P30CA014599NCI NIH HHS P50 CA125183NCI NIH HHS R01 CA089208NIDDK NIH HHS R01 DK056670Wellcome TrustWellcome Trust 068545/Z/02
6 · The paper itself

Abstract

The Serum and Glucocorticoid-regulated Kinase1 (SGK1) gene is a target of the glucocorticoid receptor (GR) and is central to the stress response in many human tissues. Because environmental stress varies across habitats, we hypothesized that natural selection shaped the geographic distribution of genetic variants regulating the level of SGK1 expression following GR activation. By combining population genetics and molecular biology methods, we identified a variant (rs9493857) with marked allele frequency differences between populations of African and European ancestry and with a strong correlation between allele frequency and latitude in worldwide population samples. This SNP is located in a GR-binding region upstream of SGK1 that was identified using a GR ChIP-chip. SNP rs9493857 also lies within a predicted binding site for Oct1, a transcription factor known to cooperate with the GR in the transactivation of target genes. Using ChIP assays, we show that both GR and Oct1 bind to this region and that the ancestral allele at rs9493857 binds the GR-Oct1 complex more efficiently than the derived allele. Finally, using a reporter gene assay, we demonstrate that the ancestral allele is associated with increased glucocorticoid-dependent gene expression when compared to the derived allele. Our results suggest a novel paradigm in which hormonal responsiveness is modulated by sequence variation in the regulatory regions of nuclear receptor target genes. Identifying such functional variants may shed light on the mechanisms underlying inter-individual variation in response to environmental stressors and to hormonal therapy, as well as in the susceptibility to hormone-dependent diseases.

Indexed as

AllelesBase SequenceBinding SitesBlack PeopleCell LineDNAEnhancer Elements, GeneticFemaleGene ExpressionGene FrequencyGenetic Predisposition to DiseaseGenetic VariationHumansImmediate-Early ProteinsNeurosecretory SystemsOctamer Transcription Factor-1DNAImmediate-Early ProteinsOctamer Transcription Factor-1POU2F1 protein, humanProtein Serine-Threonine KinasesReceptors, GlucocorticoidSerum-Glucocorticoid Regulated Kinases

Identifiers

PMID19461886
PMCPMC2679193
OpenAlexW2058917347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.