Evidence map›Paper›PMID 19459702›Full record

ArticleBiochemistry2009

Allosteric site variants of Haemophilus influenzae beta-carbonic anhydrase.

Roger S Rowlett, Chingkuang Tu, Joseph Lee, Ariel G Herman, Douglas A Chapnick, Shalini H Shah, Peter C Gareiss

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Roger S RowlettDepartment of Chemistry, Colgate University, 13 Oak Drive, Hamilton, New York 13346, USA. rrowlett@mail.colgate.edu
Chingkuang Tu
Joseph Lee
Ariel G Herman
Douglas A Chapnick
Shalini H Shah
Peter C Gareiss
Colgate University · USFlorida College · US

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM 25154NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

Haemophilus influenzae beta-carbonic anhydrase (HICA) is hypothesized to be an allosteric protein that is regulated by the binding of bicarbonate ion to a non-catalytic (inhibitory) site that controls the ligation of Asp44 to the catalytically essential zinc ion. We report here the X-ray crystallographic structures of two variants (W39F and Y181F) involved in the binding of bicarbonate ion in the non-catalytic site and an active-site variant (D44N) that is incapable of forming a strong zinc ligand. The alteration of Trp39 to Phe increases the apparent K(i) for bicarbonate inhibition by 4.8-fold. While the structures of W39F and Y181F are very similar to the wild-type enzyme, the X-ray crystal structure of the D44N variant reveals that it has adopted an active-site conformation nearly identical to that of non-allosteric beta-carbonic anhydrases. We propose that the structure of the D44N variant is likely to be representative of the active conformation of the enzyme. These results lend additional support to the hypothesis that HICA is an allosteric enzyme that can adopt active and inactive conformations, the latter of which is stabilized by bicarbonate ion binding to a non-catalytic site.

Indexed as

Amino Acid SubstitutionAllosteric SiteBicarbonatesBiocatalysisCarbonic AnhydrasesCatalytic DomainCrystallography, X-RayHaemophilus influenzaeHydrogen BondingHydrogen-Ion ConcentrationKineticsModels, MolecularOxygen IsotopesProtein ConformationRecombinant ProteinsZincBicarbonatesCarbonic AnhydrasesOxygen IsotopesRecombinant ProteinsZinc

Identifiers

PMID19459702
PMCPMC2740983
OpenAlexW2080138653

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.