ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Population structure and association mapping on chromosome 7 using a diverse panel of Chinese germplasm of rice (Oryza sativa L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Article
- Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm.Scientific reports · 2020Article
- Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.BMC plant biology · 2019Article
- Article
- Association Analysis in Rice: From Application to Utilization.Frontiers in plant science · 2016Review
- Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.Scientific reports · 2015Article
- Genetic variation of temperature-regulated curd induction in cauliflower: elucidation of floral transition by genome-wide association mapping and gene expression analysis.Frontiers in plant science · 2015Article
- Article
- A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.).BMC plant biology · 2014Article
- Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.Nature genetics · 2014Article
- Association studies of dormancy and cooking quality traits in direct-seeded indica rice.Journal of genetics · 2014Article
- Association mapping of six yield‑related traits in rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute.Rice (New York, N.Y.) · 2012Article
- Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Article
- Article
- Identification of rice transcription factors associated with drought tolerance using the Ecotilling method.PloS one · 2012Article
- Diversity and selective sweep in the OsAMT1;1 genomic region of rice.BMC evolutionary biology · 2011Article
- Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
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9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The majority of 170 rice accessions used in this study were diverse landraces or varieties from a putative mini-core collection of Chinese germplasm along with some widely used parental lines in genetic analysis or breeding (a few from abroad). The population was genotyped using 84 SSR or InDel markers on chromosome 7 and 48 markers on other chromosomes. The phenotyping of heading date, plant height and panicle length were carried out in different locations for 2 years. Based on morphological characterization, distance-based clustering and model-based estimation of marker data, the population showed a predominant structure with two subpopulations in correspondence with indica and japonica subspecies. The estimation of linkage disequilibrium in 2 Mb windows varied along chromosome 7 and showed parallel changes with inter-subspecies differentiation of marker loci (Fst). Based on the mixed linear model considering population structure and family relatedness [i.e. the (Q + K) model], one to three associated markers (P < or = 0.0001) per trait per experiment were scanned out on rice chromosome 7. Most significant loci were repeated for the data from both field experiments while two loci were associated with two or three traits. Marker-based allelic effects were shown in a couple of associated markers as examples. The application of association results in breeding program was also discussed.
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