Evidence map›Paper›PMID 19458200›Full record

ArticleMolecular biology of the cell2009

Tumor necrosis factor-receptor-associated factor-4 is a positive regulator of transforming growth factor-beta signaling that affects neural crest formation.

Tuzer Kalkan, Yasuno Iwasaki, Chong Yon Park, Gerald H Thomsen

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 48 citations in OpenAlex.

  1. Molecular Characterization of Nine TRAF Genes in Yellow Catfish (International journal of molecular sciences · 2023
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  10. Regulation of Ubiquitin Enzymes in the TGF-β Pathway.International journal of molecular sciences · 2017
    Review
  11. Proliferative role of TRAF4 in breast cancer by upregulating PRMT5 nuclear expression.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2015
    Article
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  20. Regulation of early xenopus embryogenesis by Smad ubiquitination regulatory factor 2.Developmental dynamics : an official publication of the American Association of Anatomists · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tuzer KalkanGraduate Program in Molecular and Cellular Biology and Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794, USA.
Yasuno Iwasaki
Chong Yon Park
Gerald H Thomsen
Stony Brook University · US

Funding

TRAF4 in TGF-beta Signaling and Embryonic DevelopmentR01GM076599 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI THOMSEN, GERALD H · 2006 to 2009
$1.2M
NIGMS NIH HHS R01 GM-076599NIGMS NIH HHS R01 GM076599
6 · The paper itself

Abstract

The transforming growth factor (TGF)-beta superfamily regulates cell proliferation, apoptosis, differentiation, migration, and development. Canonical TGFbeta signals are transduced to the nucleus via Smads in both major signaling branches, bone morphogenetic protein (BMP) or Activin/Nodal/TGFbeta. Smurf ubiquitin (Ub) ligases attenuate these pathways by targeting Smads and other signaling components for degradation by the 26S proteasome. Here, we identify tumor necrosis factor (TNF)-receptor-associated factor-4 (TRAF4) as a new target of Smurf1, which polyubiquitylates TRAF4 to trigger its proteasomal destruction. Unlike other TRAF family members, which mediate signal transduction by TNF, interleukin, or Toll-like receptors, we find that TRAF4 potentiates BMP and Nodal signaling. In the frog Xenopus laevis, TRAF4 mRNA is stored maternally in the egg animal pole, and in the embryo it is expressed in the gastrula marginal zone, neural plate, and cranial and trunk neural crest. Knockdown of embryonic TRAF4 impairs signaling, neural crest development and neural folding, whereas TRAF4 overexpression boosts signaling and expands the neural crest. In human embryonic kidney 293 cells, small interfering RNA knockdown of Smurf1 elevates TRAF4 levels, indicating endogenous regulation of TRAF4 by Smurf1. Our results uncover new functions for TRAF4 as a Smurf1-regulated mediator of BMP and Nodal signaling that are essential for neural crest development and neural plate morphogenesis.

Indexed as

Signal TransductionAmino Acid SequenceAnimalsBody PatterningBone Morphogenetic ProteinsGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHeLa CellsHumansMolecular Sequence DataNeural CrestNeural PlateNeural TubeNodal ProteinOligonucleotides, AntisenseProtein TransportBone Morphogenetic ProteinsNodal ProteinOligonucleotides, AntisenseSMURF1 protein, XenopusTNF Receptor-Associated Factor 4Transforming Growth Factor betaUbiquitin-Protein LigasesWnt Proteins

Identifiers

PMID19458200
PMCPMC2710828
OpenAlexW2129734965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.