Evidence map›Paper›PMID 19458110›Full record

ArticleMolecular biology and evolution2009

A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster.

Josefa González, J Michael Macpherson, Dmitri A Petrov

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Polymorphic 3D genome architecture mediated by transposable elements.bioRxiv : the preprint server for biology · 2026
    Article
  2. Expression of De Novo Open Reading Frames in Natural Populations of Drosophila melanogaster.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Article
  3. Article
  4. Regulatory Changes in the Fatty Acid ElongasebioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Cells · 2021
    Review
  8. Article
  9. Transposable elements contribute to the genomic response to insecticides inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  10. Article
  11. Population Genomics on the Fly: Recent Advances in Drosophila.Methods in molecular biology (Clifton, N.J.) · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Josefa GonzálezDepartment of Biology, Stanford University. jgonzalp@stanford.edu
J Michael Macpherson
Dmitri A Petrov

Funding

Patterns of background nucleotide substitution in the human lineageR01GM077368 · NIGMS · STANFORD UNIVERSITY · PI PETROV, DMITRI · 2006 to 2010
$989k
Howard Hughes Medical InstituteNIGMS NIH HHS GM077368NIGMS NIH HHS R01 GM077368
6 · The paper itself

Abstract

A recent genomewide screen identified 13 transposable elements that are likely to have been adaptive during or after the spread of Drosophila melanogaster out of Africa. One of these insertions, Bari-Juvenile hormone epoxy hydrolase (Bari-Jheh), was associated with the selective sweep of its flanking neutral variation and with reduction of expression of one of its neighboring genes: Jheh3. Here, we provide further evidence that Bari-Jheh insertion is adaptive. We delimit the extent of the selective sweep and show that Bari-Jheh is the only mutation linked to the sweep. Bari-Jheh also lowers the expression of its other flanking gene, Jheh2. Subtle consequences of Bari-Jheh insertion on life-history traits are consistent with the effects of reduced expression of the Jheh genes. Finally, we analyze molecular evolution of Jheh genes in both the long- and the short-term and conclude that Bari-Jheh appears to be a very rare adaptive event in the history of these genes. We discuss the implications of these findings for the detection and understanding of adaptation.

Indexed as

Conserved SequenceAllelesAmino Acid SubstitutionAnimalsBase PairingBase SequenceCell SurvivalDNA, IntergenicDNA Transposable ElementsDrosophila melanogasterEvolution, MolecularGene Expression RegulationGenes, InsectModels, GeneticMolecular Sequence DataMutagenesis, InsertionalDNA, IntergenicDNA Transposable Elements

Identifiers

PMID19458110
PMCPMC2734154

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.