Evidence map›Paper›PMID 19457268›Full record

ArticleBMC genomics2009

Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes.

Yuan Wu, Jian Yang, Fan Yang, Tao Liu, Wenchuan Leng, Yonglie Chu, Qi Jin

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
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  4. Review
  5. Article
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  11. Fungi that Infect Humans.Microbiology spectrum · 2017
    Review
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  15. Article
  16. The spectrum of fungi that infects humans.Cold Spring Harbor perspectives in medicine · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yuan WuDepartment of Microbiology and Immunology, Medical School of Xi'an Jiaotong University, Shaanxi, 710061, PR China. doctorjenny@yahoo.cn
Jian Yang
Fan Yang
Tao Liu
Wenchuan Leng
Yonglie Chu
Qi Jin
Chinese Academy of Medical Sciences & Peking Union Medical College · CNXi'an Jiaotong University · CN

Funding

Effect of Prazosin on Alcohol Craving, Stress Dysregulation and Alcohol RelapseR01AA020504 · NIAAA · YALE UNIVERSITY · PI FOX, HELEN CECILIA, SINHA, RAJITA · 2012 to 2016
$2.7M
NIAAA NIH HHS R01 AA020504
6 · The paper itself

Abstract

backgroundDermatophytes are fungi that cause superficial infections of the skin, hair, and nails. They are the most common agents of fungal infections worldwide. Dermatophytic fungi constitute three genera, Trichophyton, Epidermophyton, and Microsporum, and the evolutionary relationships between these genera are epidemiologically important. Mitochondria are considered to be of monophyletic origin and mitochondrial sequences offer many advantages for phylogenetic studies. However, only one complete dermatophyte mitochondrial genome (E. floccosum) has previously been determined.

resultsThe complete mitochondrial DNA sequences of five dermatophyte species, T. rubrum (26,985 bp), T. mentagrophytes (24,297 bp), T. ajelloi (28,530 bp), M. canis (23,943 bp) and M. nanum (24,105 bp) were determined. These were compared to the E. floccosum sequence. Mitochondrial genomes of all 6 species were found to harbor the same set of genes arranged identical order indicating that these dermatophytes are closely related. Genome size differences were largely due to variable lengths of non-coding intergenic regions and the presence/absence of introns. Phylogenetic analyses based on complete mitochondrial genomes reveals that the divergence of the dermatophyte clade was later than of other groups of pathogenic fungi.

conclusionThis is the first systematic comparative genomic study on dermatophytes, a highly conserved and recently-diverged lineage of ascomycota fungi. The data reported here provide a basis for further exploration of interrelationships between dermatophytes and will contribute to the study of mitochondrial evolution in higher fungi.

Indexed as

Evolution, MolecularGenome, MitochondrialPhylogenyArthrodermataceaeComparative Genomic HybridizationDNA, FungalDNA, MitochondrialEpidermophytonGene OrderGenome, FungalIntronsMicrosporumOpen Reading FramesSequence Analysis, DNATrichophytonDNA, FungalDNA, Mitochondrial

Identifiers

PMID19457268
PMCPMC2693141
OpenAlexW2005578947

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.