Evidence map›Paper›PMID 19456839›Full record

ArticleClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2010

CagA C-terminal variations in Helicobacter pylori strains from Colombian patients with gastric precancerous lesions.

L A Sicinschi, P Correa, R M Peek, M C Camargo, M B Piazuelo, J Romero-Gallo, S S Hobbs, U Krishna, A Delgado, R Mera and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 108 citations in OpenAlex.

  1. Effect of treatment failure on the CagA EPIYA motif inWorld journal of gastroenterology · 2017
    Trial
  2. Genomic epidemiology ofFrontiers in microbiology · 2025
    Article
  3. Article
  4. Article
  5. Inflammation and Digestive Cancer.International journal of molecular sciences · 2023
    Review
  6. Correlation analysis of gastric mucosal lesions withAnnals of translational medicine · 2022
    Article
  7. Influence ofWorld journal of clinical oncology · 2022
    Review
  8. Diseases (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Virulence Genes ofCanadian journal of gastroenterology & hepatology · 2022
    Article
  11. Article
  12. Discovery of unique AfricanWorld journal of gastroenterology · 2020
    Article
  13. Determination ofHeliyon · 2020
    Article
  14. Review
  15. Article
  16. Inhibitory Effect of β-Carotene onAntioxidants (Basel, Switzerland) · 2019
    Article
  17. High Prevalence of Antibiotic Resistance in IranianJournal of clinical medicine · 2019
    Article
  18. Article
  19. Article
  20. CharacterizingGut and liver · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

L A SicinschiDivision of Gastroenterology, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN, USA.
P Correa
R M Peek
M C Camargo
M B Piazuelo
J Romero-Gallo
S S Hobbs
U Krishna
A Delgado
R Mera
L E Bravo
B G Schneider
Vanderbilt University · USUniversidad del Valle · CO

Funding

Understanding and Controlling p120 Dysfunction in CRCP50CA095103 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 2002 to 2017
$33.6M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Project 3 - Molecular Signatures of Gastric Carcinogenesis in the Host Response to H. pyloriP01CA028842 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WILSON, KEITH T. · 1985 to 2019
$15.8M
H.Pylori Relationship to Digestive Diseases and CancerR01CA077955 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2003 to 2026
$9.7M
Helicobacter Pylori and Gastrointestinal BiologyR01DK058587 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PEEK, RICHARD M. · 2001 to 2024
$7.8M
Mechanism that regulate Helicobacter pylori-induced beta-caterin activationR01DK073902 · NIDDK · VANDERBILT UNIVERSITY · PI PEEK, RICHARD M. · 2006 to 2009
$1.2M
H PYLORI RELATIONSHIP TO DIGESTIVE DISEASES AND CANCERR29CA077955 · NCI · VANDERBILT UNIVERSITY · PI PEEK, RICHARD M · 1997 to 2001
$294k
NCI NIH HHS P01 CA028842NCI NIH HHS P01 CA 28842NCI NIH HHS P50 CA095103NCI NIH HHS P50 CA95103NCI NIH HHS R01 CA077955NCI NIH HHS R01 CA 77955NCI NIH HHS R29 CA077955NIDDK NIH HHS P30 DK058404NIDDK NIH HHS P30DK058404NIDDK NIH HHS R01 DK058587NIDDK NIH HHS R01 DK073902NIDDK NIH HHS R01 DK 58587NIDDK NIH HHS R01 DK 73902
6 · The paper itself

Abstract

The C-terminus of the Helicobacter pylori CagA protein is polymorphic, bearing different EPIYA sequences (EPIYA-A, B, C or D), and one or more CagA multimerization (CM) motifs. The number of EPIYA-C motifs is associated with precancerous lesions and gastric cancer (GC). The relationship between EPIYA, CM motifs and gastric lesions was examined in H. pylori-infected Colombian patients from areas of high and low risk for GC. Genomic DNA was extracted from H. pylori strains cultured from gastric biopsies from 80 adults with dyspeptic symptoms. Sixty-seven (83.8%) of 80 strains were cagA positive. The 3' region of cagA was sequenced, and EPIYA and CM motifs were identified. CagA proteins contained one (64.2%), two (34.3%) or three EPIYA-C motifs (1.5%), all with Western type CagA-specific sequences. Strains with one EPIYA-C motif were associated with less severe gastric lesions (non-atrophic and multifocal atrophic gastritis), whereas strains with multiple EPIYA-C motifs were associated with more severe lesions (intestinal metaplasia and dysplasia) (p <0.001). In 54 strains, the CM motifs were identical to those common in Western strains. Thirteen strains from the low-risk area contained two different CM motifs: one of Western type located within the EPIYA-C segment and another following the EPIYA-C segment and resembling the CM motif found in East Asian strains. These strains induced significantly shorter projections in AGS cells and an attenuated reduction in levels of CagA upon immunodepletion of SHP-2 than strains possessing Western/Western motifs. This novel finding may partially explain the difference in GC incidence in these populations.

Indexed as

AdultAmino Acid SequenceAntigens, BacterialBacterial ProteinsColombiaGastric MucosaHelicobacter InfectionsHelicobacter pyloriHumansMaleMiddle AgedMolecular Sequence DataPolymorphism, GeneticPrecancerous ConditionsStomach NeoplasmsAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pylori

Identifiers

PMID19456839
PMCPMC2837774
OpenAlexW1483774738

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.