Evidence map›Paper›PMID 19456320›Full record

ArticleAnnals of human genetics2009

A genome-wide association study of autism reveals a common novel risk locus at 5p14.1.

Deqiong Ma, Daria Salyakina, James M Jaworski, Ioanna Konidari, Patrice L Whitehead, Ashley N Andersen, Joshua D Hoffman, Susan H Slifer, Dale J Hedges, Holly N Cukier and 11 more

Open access · greenAbstract read
In one paragraph

Article in Annals of human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed, 2 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 2 syntheses or guidelines pooled it, 223 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Male-Biased Social Deficits in Chd8Neuroscience bulletin · 2026
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60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

Deqiong MaMiami Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
Daria Salyakina
James M Jaworski
Ioanna Konidari
Patrice L Whitehead
Ashley N Andersen
Joshua D Hoffman
Susan H Slifer
Dale J Hedges
Holly N Cukier
Anthony J Griswold
Jacob L McCauley
Gary W Beecham
Harry H Wright
Ruth K Abramson
Eden R Martin
John P Hussman
John R Gilbert
Michael L Cuccaro
Jonathan L Haines
Margaret A Pericak-Vance
University of Miami · USUniversity of South Carolina · USCenter for Human Genetics · USJohn P. Hussman Foundation · US

Funding

USE OF DNA PROBE FOR CHOLINERGIC AND NON-CHOLINERGIC MG ANTIGENP01NS026630 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 1989 to 2009
$12.6M
Molecular and Genetic Epidemiology of AutismR01NS036768 · NINDS · DUKE UNIVERSITY · PI PERICAK-VANCE, MARGARET A. · 1997 to 2006
$9.3M
Molecular and Genetic Epidemiology of AutismR01MH080647 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 2007 to 2011
$5.9M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
NIGMS NIH HHS T32 GM080178NIMH NIH HHS MH080647NIMH NIH HHS R01 MH080647NINDS NIH HHS NS26630NINDS NIH HHS NS36768NINDS NIH HHS P01 NS026630NINDS NIH HHS R01 NS036768
6 · The paper itself

Abstract

Although autism is one of the most heritable neuropsychiatric disorders, its underlying genetic architecture has largely eluded description. To comprehensively examine the hypothesis that common variation is important in autism, we performed a genome-wide association study (GWAS) using a discovery dataset of 438 autistic Caucasian families and the Illumina Human 1M beadchip. 96 single nucleotide polymorphisms (SNPs) demonstrated strong association with autism risk (p-value < 0.0001). The validation of the top 96 SNPs was performed using an independent dataset of 487 Caucasian autism families genotyped on the 550K Illumina BeadChip. A novel region on chromosome 5p14.1 showed significance in both the discovery and validation datasets. Joint analysis of all SNPs in this region identified 8 SNPs having improved p-values (3.24E-04 to 3.40E-06) than in either dataset alone. Our findings demonstrate that in addition to multiple rare variations, part of the complex genetic architecture of autism involves common variation.

Indexed as

Genome-Wide Association StudyAdolescentAutistic DisorderChildChild, PreschoolChromosomes, Human, Pair 5FemaleGenetic Predisposition to DiseaseHumansMalePedigreePolymorphism, Single NucleotideWhite PeopleYoung Adult

Identifiers

PMID19456320
PMCPMC2918410
OpenAlexW1993360322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.