ArticleNucleic acids research2009
Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
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- TogoID: an exploratory ID converter to bridge biological datasets.Bioinformatics (Oxford, England) · 2022Article
- Prediction of Side Effects Using Comprehensive Similarity Measures.BioMed research international · 2020Article
- A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model.Biology open · 2018Article
- Learning from biomedical linked data to suggest valid pharmacogenes.Journal of biomedical semantics · 2017Article
- Human fallopian tube proteome shows high coverage of mesenchymal stem cells associated proteins.Bioscience reports · 2016Article
- A simplicial complex-based approach to unmixing tumor progression data.BMC bioinformatics · 2015Article
- VaDE: a manually curated database of reproducible associations between various traits and human genomic polymorphisms.Nucleic acids research · 2015Article
- EHFPI: a database and analysis resource of essential host factors for pathogenic infection.Nucleic acids research · 2015Article
- TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.Nucleic acids research · 2014Article
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- GWAS and drug targets.BMC genomics · 2014Article
- H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.Nucleic acids research · 2013Article
- AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.BMC bioinformatics · 2012Article
- Overview of biological database mapping services for interoperation between different 'omics' datasets.Human genomics · 2011Review
- Article
- H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.Nucleic acids research · 2010Article
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Authors and funding
2 authors.
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Abstract
Hyperlink Management System (HMS) is a system for automatically updating and maintaining hyperlinks among major public databases in the field of life science. We daily create corresponding tables of data IDs of major databases for human genes and proteins, and provide a CGI-program that returns correct and up-to-date URLs for showing data of various databases that correspond to user-specified IDs. The HMS can deal with various IDs: accession numbers of International Nucleotide Sequence Databases, HUGO Gene Symbols and IDs of UniProt, PDB, H-InvDB and others, and it can return URLs of various databases: H-InvDB, HUGO Gene Nomenclature Committee Database, NCBI Entrez Gene, UniProt, PDB and others. For example, 23 297 pages of Locus view of H-InvDB are reachable by using HUGO Gene Symbols through the HMS. Not only the CGI-program, the HMS provides a Web page for finding and opening URLs of these databases. Although hyperlinking is an effective way of relating biological data among different databases, updating hyperlinks has been a laborious work. The HMS fully automates the job, enabling maintenance-free hyperlinks. We also developed the ID Converter System (ICS) for simply converting data IDs by using corresponding tables in the HMS. The HMS and ICS are freely available at http://biodb.jp/.
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