Evidence map›Paper›PMID 19454239›Full record

ArticleAnalytical biochemistry2009

Glycan reductive isotope labeling for quantitative glycomics.

Baoyun Xia, Christa L Feasley, Goverdhan P Sachdev, David F Smith, Richard D Cummings

Abstract read
In one paragraph

Article in Analytical biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. CA19-9 as a therapeutic target in pancreatitis.Annals of translational medicine · 2019
    Article
  11. Characterization of glycan substrates accumulating in GM1 Gangliosidosis.Molecular genetics and metabolism reports · 2019
    Article
  12. 8-plex LC-MS/MS Analysis of PermethylatedAnalytical chemistry · 2019
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Baoyun XiaDepartment of Biochemistry and Glycomics Center at Emory University, Emory University School of Medicine, Atlanta, GA 30322, USA.
Christa L Feasley
Goverdhan P Sachdev
David F Smith
Richard D Cummings

Funding

Protein-glycan Interactions in the Vascular SystemP01HL085607 · NHLBI · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI MCEVER, RODGER PAUL · 2006 to 2015
$16.8M
Biochemical Role of Airway Mucins in Cystic FibrosisR01HL065509 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI SACHDEV, GOVERDHAN PAL · 2001 to 2003
$655k
NHLBI NIH HHS HL065509NHLBI NIH HHS HL085607NHLBI NIH HHS P01 HL085607NHLBI NIH HHS R01 HL065509
6 · The paper itself

Abstract

Many diseases and disorders are characterized by quantitative and/or qualitative changes in complex carbohydrates. Mass spectrometry methods show promise in monitoring and detecting these important biological changes. Here we report a new glycomics method, termed glycan reductive isotope labeling (GRIL), where free glycans are derivatized by reductive amination with the differentially coded stable isotope tags [(12)C(6)]aniline and [(13)C(6)]aniline. These dual-labeled aniline-tagged glycans can be recovered by reverse-phase chromatography and can be quantified based on ultraviolet (UV) absorbance and relative ion abundances. Unlike previously reported isotopically coded reagents for glycans, GRIL does not contain deuterium, which can be chromatographically resolved. Our method shows no chromatographic resolution of differentially labeled glycans. Mixtures of differentially tagged glycans can be directly compared and quantified using mass spectrometric techniques. We demonstrate the use of GRIL to determine relative differences in glycan amount and composition. We analyze free glycans and glycans enzymatically or chemically released from a variety of standard glycoproteins, as well as human and mouse serum glycoproteins, using this method. This technique allows linear relative quantitation of glycans over a 10-fold concentration range and can accurately quantify sub-picomole levels of released glycans, providing a needed advancement in the field of glycomics.

Indexed as

Isotope LabelingAnimalsGlycomicsGlycoproteinsHumansMicePolysaccharidesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationGlycoproteinsPolysaccharides

Identifiers

PMID19454239
PMCPMC2706496

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.