Evidence map›Paper›PMID 19454014›Full record

ArticleBMC microbiology2009

Proteomics of Porphyromonas gingivalis within a model oral microbial community.

Masae Kuboniwa, Erik L Hendrickson, Qiangwei Xia, Tiansong Wang, Hua Xie, Murray Hackett, Richard J Lamont

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 108 citations in OpenAlex.

  1. Review
  2. Co-Culture ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. The polymicrobial pathogenicity ofFrontiers in oral health · 2024
    Article
  5. Review
  6. Contribution of -Omics Technologies in the Study ofInternational journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Review
  10. Potential of Prebiotic D-Tagatose for Prevention of Oral Disease.Frontiers in cellular and infection microbiology · 2021
    Article
  11. Review
  12. International journal of molecular sciences · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Frontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Masae KuboniwaDepartment of Preventive Dentistry, Osaka University Graduate School of Dentistry, Osaka, Japan. kuboniwa@dent.osaka-u.ac.jp
Erik L Hendrickson
Qiangwei Xia
Tiansong Wang
Hua Xie
Murray Hackett
Richard J Lamont
Seattle University · USUniversity of Washington · USMeharry Medical College · USOsaka University of Economics · JPUniversity of Florida · US

Funding

MOLECULAR ASPECTS OF ORAL PLAQUE FORMATIONR01DE012505 · NIDCR · UNIVERSITY OF WASHINGTON · PI Richard J Lamont, JAN S POTEMPA · 1998 to 2026
$9.5M
P GINGIVALIS INTERACTIONS WITH GINGIVAL EPITHELIAL CELLSR01DE011111 · NIDCR · UNIVERSITY OF WASHINGTON · PI HARIBABU BODDULURI, Richard J Lamont · 1995 to 2026
$5.4M
Proteomics of Porphyromonas gingivalis interactions with Fusobacterium nucleatumR01DE014372 · NIDCR · UNIVERSITY OF WASHINGTON · PI HACKETT, MURRAY · 2003 to 2014
$3.7M
P.gingivalis Interactions with Gingival Epithelial CellsR37DE011111 · NIDCR · UNIVERSITY OF LOUISVILLE · PI LAMONT, RICHARD J · 2009 to 2018
$3.6M
Proteomics of P. gingivalis interactions with F. nucleatum and S. gordoniiR56DE014372 · NIDCR · UNIVERSITY OF WASHINGTON · PI HACKETT, MURRAY · 2009 to 2015
$1.2M
NIDCR NIH HHS DE11111NIDCR NIH HHS DE12505NIDCR NIH HHS DE14372NIDCR NIH HHS R01 DE014372
6 · The paper itself

Abstract

backgroundPorphyromonas gingivalis is a periodontal pathogen that resides in a complex multispecies microbial biofilm community known as dental plaque. Confocal laser scanning microscopy showed that P. gingivalis can assemble into communities in vitro with Streptococcus gordonii and Fusobacterium nucleatum, common constituents of dental plaque. Whole cell quantitative proteomics, along with mutant construction and analysis, were conducted to investigate how P. gingivalis adapts to this three species community.

results1156 P. gingivalis proteins were detected qualitatively during comparison of the three species model community with P. gingivalis incubated alone under the same conditions. Integration of spectral counting and summed signal intensity analyses of the dataset showed that 403 proteins were down-regulated and 89 proteins up-regulated. The proteomics results were inspected manually and an ontology analysis conducted using DAVID. Significant decreases were seen in proteins involved in cell shape and the formation of the cell envelope, as well as thiamine, cobalamin, and pyrimidine synthesis and DNA repair. An overall increase was seen in proteins involved in protein synthesis. HmuR, a TonB dependent outer membrane receptor, was up-regulated in the community and an hmuR deficient mutant was deficient in three species community formation, but was unimpaired in its ability to form mono- or dual-species biofilms.

conclusionCollectively, these results indicate that P. gingivalis can assemble into a heterotypic community with F. nucleatum and S. gordonii, and that a community lifestyle provides physiologic support for P. gingivalis. Proteins such as HmuR, that are up-regulated, can be necessary for community structure.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsBiofilmsDown-RegulationFusobacterium nucleatumHumansMicroscopy, ConfocalMouthMutationPorphyromonas gingivalisProteomicsStreptococcus gordoniiUp-RegulationBacterial Outer Membrane ProteinsBacterial Proteins

Identifiers

PMID19454014
PMCPMC2689231
OpenAlexW2103377606

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.