Evidence map›Paper›PMID 19452629›Full record

ArticleJournal of molecular biology2009

Solution structure of S100A1 bound to the CapZ peptide (TRTK12).

Nathan T Wright, Brian R Cannon, Paul T Wilder, Michael T Morgan, Kristen M Varney, Danna B Zimmer, David J Weber

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Structural insights into the regulation of RyR1 by S100A1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Pathogenic role of S100 proteins in psoriasis.Frontiers in immunology · 2023
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. S100 proteins as therapeutic targets.Biophysical reviews · 2018
    Review
  13. Article
  14. Article
  15. X-ray crystal structure of human calcium-bound S100A1.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  16. Article
  17. Review
  18. Article
  19. S100 proteins in cancer.Nature reviews. Cancer · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nathan T WrightDepartment of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 108 North Greene Street, Baltimore, MD 21201, USA.
Brian R Cannon
Paul T Wilder
Michael T Morgan
Kristen M Varney
Danna B Zimmer
David J Weber
University of Maryland, Baltimore · USTexas A&M University · US

Funding

Interdisciplinary Training Program Muscle BiologyT32AR007592 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI Aikaterini Kontrogianni-Konstantopoulos · 1996 to 2026
$11.7M
Restoration of Tumor Suppression Activity in Malignant MelanomaR01CA107331 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2006 to 2015
$5.4M
The Structure and Function of S100 ProteinsR01GM058888 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 1999 to 2010
$3.4M
800 MHZ NMR SPECTROMETERS10RR015741 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2001 to 2001
$500k
600 MHz NMR Spectrometer ConsoleS10RR023447 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2007 to 2007
$362k
Cryoprobe for a 600 Mhz NMR spectrometerS10RR016812 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2002 to 2002
$231k
600 MHZ NMR SPECTROMETERS10RR010441 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 1995 to 1995
–
NCI NIH HHS CA107331NCI NIH HHS R01 CA107331NCRR NIH HHS S10 RR015741NCRR NIH HHS S10 RR016812NCRR NIH HHS S10 RR023447NCRR NIH HHS S10 RR10441NCRR NIH HHS S10 RR15741NCRR NIH HHS S10 RR16812NCRR NIH HHS S10 RR23447NIAMS NIH HHS T32 AR007592NIGMS NIH HHS GM58888NIGMS NIH HHS R01 GM058888
6 · The paper itself

Abstract

As is typical for S100-target protein interactions, a Ca 2+-dependent conformational change in S100A1 is required to bind to a 12-residue peptide (TRTK12) derived from the actin-capping protein CapZ. In addition, the Ca 2+-binding affinity of S100A1 is found to be tightened (greater than threefold) when TRTK12 is bound. To examine the biophysical basis for these observations, we determined the solution NMR structure of TRTK12 in a complex with Ca 2+-loaded S100A1. When bound to S100A1, TRTK12 forms an amphipathic helix (residues N6 to S12) with several favorable hydrophobic interactions observed between W7, I10, and L11 of the peptide and a well-defined hydrophobic binding pocket in S100A1 that is only present in the Ca 2+-bound state. Next, the structure of S100A1-TRTK12 was compared to that of another S100A1-target complex (i.e., S100A1-RyRP12), which illustrated how the binding pocket in Ca 2+-S100A1 can accommodate peptide targets with varying amino acid sequences. Similarities and differences were observed when the structures of S100A1-TRTK12 and S100B-TRTK12 were compared, providing insights regarding how more than one S100 protein can interact with the same peptide target. Such comparisons, including those with other S100-target and S100-drug complexes, provide the basis for designing novel small-molecule inhibitors that could be specific for blocking one or more S100-target protein interactions.

Indexed as

Models, MolecularBinding SitesCalciumCapZ Actin Capping ProteinHydrophobic and Hydrophilic InteractionsNuclear Magnetic Resonance, BiomolecularOligopeptidesPeptide FragmentsProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryS100 ProteinsCalciumCapZ Actin Capping ProteinOligopeptidesPeptide FragmentsS100A1 proteinS100 ProteinsTRTK-12 peptide

Identifiers

PMID19452629
PMCPMC2768541
OpenAlexW2081429968

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.