Evidence map›Paper›PMID 19451591›Full record

ArticleGenome research2009

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus.

Adam Monier, António Pagarete, Colomban de Vargas, Michael J Allen, Betsy Read, Jean-Michel Claverie, Hiroyuki Ogata

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 179 citations in OpenAlex.

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  8. The GC% landscape of the Nucleocytoviricota.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Adam MonierStructural and Genomic Information Laboratory, CNRS-UPR2589, Mediterranean Institute of Microbiology (IFR-88), Université de la Méditerranée, Parc Scientifique de Luminy, Marseille, France.
António Pagarete
Colomban de Vargas
Michael J Allen
Betsy Read
Jean-Michel Claverie
Hiroyuki Ogata
Centre National de la Recherche Scientifique · FRCalifornia State University, San Marcos · USPlymouth Marine Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions between viruses and phytoplankton, the main primary producers in the oceans, affect global biogeochemical cycles and climate. Recent studies are increasingly revealing possible cases of gene transfers between cyanobacteria and phages, which might have played significant roles in the evolution of cyanobacteria/phage systems. However, little has been documented about the occurrence of horizontal gene transfer in eukaryotic phytoplankton/virus systems. Here we report phylogenetic evidence for the transfer of seven genes involved in the sphingolipid biosynthesis pathway between the cosmopolitan eukaryotic microalga Emiliania huxleyi and its large DNA virus EhV. PCR assays indicate that these genes are prevalent in E. huxleyi and EhV strains isolated from different geographic locations. Patterns of protein and gene sequence conservation support that these genes are functional in both E. huxleyi and EhV. This is the first clear case of horizontal gene transfer of multiple functionally linked enzymes in a eukaryotic phytoplankton-virus system. We examine arguments for the possible direction of the gene transfer. The virus-to-host direction suggests the existence of ancient viruses that controlled the complex metabolic pathway in order to infect primitive eukaryotic cells. In contrast, the host-to-virus direction suggests that the serial acquisition of genes involved in the same metabolic pathway might have been a strategy for the ancestor of EhVs to stay ahead of their closest relatives in the great evolutionary race for survival.

Indexed as

Gene Transfer, HorizontalBiosynthetic PathwaysDNA, AlgalDNA, ViralDNA VirusesEukaryotaEukaryotic CellsHost-Pathogen InteractionsLysophospholipidsMolecular Sequence DataMolecular StructureMutationOxidoreductasesPhosphoric Monoester HydrolasesPhylogenyPolymerase Chain Reactiondihydroceramide desaturasedihydroceramide synthaseDNA, AlgalDNA, ViralLysophospholipidsOxidoreductasesPhosphoric Monoester HydrolasesSerine C-PalmitoyltransferaseSphingolipidsSphingosinesphingosine 1-phosphate

Identifiers

PMID19451591
PMCPMC2720186
OpenAlexW2104960949

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.