Evidence map›Paper›PMID 19450479›Full record

ArticleBiophysical journal2009

Energy and structure of the M2 helix in acetylcholine receptor-channel gating.

Archana Jha, Prasad Purohit, Anthony Auerbach

Abstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  10. The energy and work of a ligand-gated ion channel.Journal of molecular biology · 2013
    Review
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  20. Linear rate-equilibrium relations arising from ion channel-bilayer energetic coupling.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Archana JhaDepartment of Physiology and Biophysics, State University of New York, Buffalo, New York, USA.
Prasad Purohit
Anthony Auerbach

Funding

MULTIPLE ACTIVITY PATTERNS OF ACETYLCHOLINE RECEPTORSR37NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 2000 to 2013
$6.9M
Multiple Activity Patterns of Acetylcholine ReceptorsR56NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 2014 to 2014
$530k
MULTIPLE ACTIVITY PATTERNS OF ACETYLCHOLINE RECEPTORSR01NS023513 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI AUERBACH, ANTHONY L · 1987 to 1999
–
NINDS NIH HHS NS-23513NINDS NIH HHS R01 NS023513NINDS NIH HHS R37 NS023513NINDS NIH HHS R56 NS023513
6 · The paper itself

Abstract

We studied single-channel currents from neuromuscular acetylcholine receptor-channels with mutations in the pore-lining, M2 helix of the epsilon-subunit. Three parameters were quantified: 1), the diliganded gating equilibrium constant (E(2)), which reflects the energy difference between C(losed) and O(pen) conformations; 2), the correlation between the opening rate constant and E(2) on a log-log scale (Phi), which illuminates the energy character of the residue (C- versus O-like) within the C<-->O isomerization process; and 3), the open-channel current amplitude (i(0)), which reports whether a mutation alters the energetics of ion permeation. The largest E(2) changes were observed in the cytoplasmic half of epsilonM2 (5', 9', 12', 13', and 16'), with smaller changes apparent for residues > or =17'. Phi was approximately 0.54 for most epsilonM2 residues, but was approximately 0.32 at the positions that had largest E(2) changes. An arginine substitution reduced i(0) significantly at six positions, with the magnitude of the reduction increasing, 16'-->2'. The measurements suggest that the 9', 12', and 13' residues experience large and late free-energy changes in the channel-opening process. We speculate that in the gating isomerization the pore-facing residues >6' and <16' experience multiple energy perturbations associated with changes in protein structure and, perhaps, hydration.

Indexed as

Ion Channel GatingAmino Acid SequenceAnimalsCell LineHumansKineticsMiceMolecular Sequence DataMutationProtein Structure, SecondaryReceptors, CholinergicThermodynamicsReceptors, Cholinergic

Identifiers

PMID19450479
PMCPMC2712209

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.