Evidence map›Paper›PMID 19450234›Full record

ArticleBioTechniques2009

A novel L1 retrotransposon marker for HeLa cell line identification.

Raheleh Rahbari, Tom Sheahan, Vasileios Modes, Pam Collier, Catriona Macfarlane, Richard M Badge

Abstract readTechnical Report
In one paragraph

Article in BioTechniques, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Current preclinical models of brain metastasis.Clinical & experimental metastasis · 2024
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Preparation and Evaluation ofPharmaceuticals (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Cervical anticancer activities ofVeterinary world · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Raheleh RahbariDepartment of Genetics, University of Leicester, Leicester, UK.
Tom Sheahan
Vasileios Modes
Pam Collier
Catriona Macfarlane
Richard M Badge

Funding

Wellcome Trust 075163Wellcome Trust 075163/Z/04/Z
6 · The paper itself

Abstract

The HeLa cell line is the oldest, most widely distributed, permanent human cell line. As a nearly ubiquitous inhabitant of laboratories using tissue culture techniques, its aggressive growth characteristics make it a problematic contaminant that can overgrow less robust cell lines. Consequently, HeLa contamination is common in both the research laboratory and cell line repository contexts, and its detection is hampered by the lack of a rapid, sensitive and robust assay. Here we report the development of a HeLa-specific DNA diagnostic test: a single duplex detection PCR assay targeting an L1 retrotransposon insertion. All HeLa clones from a geographically diverse panel were positive by this assay, and the particular L1 insertion we identified appears to be unique to the HeLa cell line. The assay can detect very low levels of HeLa contamination (<1%), and can be performed on un-purified cell pellets, allowing rapid routine screening.

Indexed as

Cells, CulturedHeLa CellsBiomarkersEquipment ContaminationGene FrequencyHumansLong Interspersed Nucleotide ElementsPolymerase Chain ReactionBiomarkers

Identifiers

PMID19450234
PMCPMC2696096

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.