Evidence map›Paper›PMID 19449186›Full record

ArticleCurrent genetics2009

A frameshift mutation of the chloroplast matK coding region is associated with chlorophyll deficiency in the Cryptomeria japonica virescent mutant Wogon-Sugi.

Tomonori Hirao, Atsushi Watanabe, Manabu Kurita, Teiji Kondo, Katsuhiko Takata

Abstract read
In one paragraph

Article in Current genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Complete Chloroplast Genomes and Comparative Analyses ofInternational journal of molecular sciences · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

Tomonori HiraoForestry and Forest Products Research Institute, Forest Tree Breeding Center, Ishi, Juo, Hitachi, Ibaraki, Japan. hiratomo@affrc.go.jp
Atsushi Watanabe
Manabu Kurita
Teiji Kondo
Katsuhiko Takata

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wogon-Sugi has been reported as a cytoplasmically inherited virescent mutant selected from a horticultural variety of Cryptomeria japonica. Although previous studies of plastid structure and inheritance indicated that at least some mutations are encoded by the chloroplast genome, the causative gene responsible for the primary chlorophyll deficiency in Wogon-Sugi, has not been identified. In this study, we identified this gene by genomic sequencing of chloroplast DNA and genetic analysis. Chloroplast DNA sequencing of 16 wild-type and 16 Wogon-Sugi plants showed a 19-bp insertional sequence in the matK coding region in the Wogon-Sugi. This insertion disrupted the matK reading frame. Although an indel mutation in the ycf1 and ycf2 coding region was detected in Wogon-Sugi, sequence variations similar to that of Wogon-Sugi were also detected in several wild-type lines, and they maintained the reading frame. Genetic analysis of the 19 bp insertional mutation in the matK coding region showed that it was found only in the chlorophyll-deficient sector of 125 full-sibling seedlings. Therefore, the 19-bp insertion in the matK coding region is the most likely candidate at present for a mutation underlying the Wogon-Sugi phenotype.

Indexed as

Frameshift MutationAmino Acid SequenceBase SequenceChlorophyllCryptomeriaDNA, ChloroplastEndoribonucleasesGenetic VariationINDEL MutationMolecular Sequence DataNucleotidyltransferasesPhenotypePlant ProteinsSequence Analysis, DNAChlorophyllDNA, ChloroplastEndoribonucleasesmRNA maturaseNucleotidyltransferasesPlant Proteins

Identifiers

PMID19449186
PMCPMC2691868

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.