Evidence map›Paper›PMID 19446588›Full record

ArticleHuman immunology2009

HLA-A01-, -A03-, and -A024-binding nanomeric epitopes in polyomavirus BK large T antigen.

Bala Ramaswami, Iulia Popescu, Camila Macedo, Diana Metes, Marta Bueno, Adriana Zeevi, Ron Shapiro, Raphael Viscidi, Parmjeet S Randhawa

Open access · greenAbstract read
In one paragraph

Article in Human immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Characterization of Immunodominant BK Polyomavirus 9mer Epitope T Cell Responses.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2016
    Article
  5. HLA-A2, HLA-B44 and HLA-DR15 are associated with lower risk of BK viremia.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2013
    Article
  6. Review
  7. Article
  8. Merkel cell polyomavirus-specific CD8⁺ and CD4⁺ T-cell responses identified in Merkel cell carcinomas and blood.Clinical cancer research : an official journal of the American Association for Cancer Research · 2011
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Bala RamaswamiDepartment of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Iulia Popescu
Camila Macedo
Diana Metes
Marta Bueno
Adriana Zeevi
Ron Shapiro
Raphael Viscidi
Parmjeet S Randhawa
University of Pittsburgh · USJohns Hopkins University · US

Funding

Polyomavirus Infection after Kidney TransplantationR01AI051227 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S · 2003 to 2011
$2.3M
Immune Response to Polyomavirus InfectionR01AI063360 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S · 2006 to 2010
$2.0M
Immune Response to Polyomavirus InfectionR56AI063360 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S, VISCIDI, RAPHAEL PAUL · 2012 to 2012
$379k
NIAID NIH HHS AI 63360NIAID NIH HHS R01 AI051227NIAID NIH HHS R01 AI063360NIAID NIH HHS R01 AI 51227NIAID NIH HHS R56 AI063360
6 · The paper itself

Abstract

Polyomavirus BK (BKV) infections are increasingly recognized. The development of immune-monitoring strategies against BKV requires definition of antigenic epitopes. Bioinformatic algorithms were used to identify 60 BKV large T-antigen (LT-Ag) peptides predicted to bind HLA class I alleles. In vitro peptide binding was used to select a subset of 19 peptides for interferon (IFN)-gamma ELISPOT assays in 13 healthy subjects and 12 kidney transplant recipients. Four A01-, nine A03-, and five A24-binding immunogenic peptides were identified in 1 to 3 (14-67%) tested subjects in each group. BKV epitope sequences were identical to homologous JC virus sequences for 3 of 19 peptides and homologous SV40 sequences for 5 of 19 peptides. Homology modeling localized these epitopes to the helicase, origin of DNA binding, or J domains, respectively. In conclusion, we have identified multiple 9-mer BKV LT-Ag-derived immunogenic epitopes that bind HLA-A01, -A03, or -A24 molecules. Sequence alignments indicate that two epitopes, FLICKGVNK and RYWLFKGPI, are common to BKV, JC virus, and SV40 virus.

Indexed as

AdultAntigens, Viral, TumorBK VirusCells, CulturedComputer SimulationEpitope MappingEpitopes, T-LymphocyteFemaleGraft RejectionHLA-A AntigensHumansInterferon-gammaJC VirusKidney TransplantationLymphocyte ActivationMaleAntigens, Viral, TumorEpitopes, T-LymphocyteHLA-A AntigensInterferon-gammaPeptide Fragments

Identifiers

PMID19446588
PMCPMC3086345
OpenAlexW2028399813

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.