Evidence map›Paper›PMID 19446530›Full record

ArticleStructure (London, England : 1993)2009

Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy.

Yao Cong, Qinfen Zhang, David Woolford, Thorsten Schweikardt, Htet Khant, Matthew Dougherty, Steven J Ludtke, Wah Chiu, Heinz Decker

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Structure and Characterization of Eriphia verrucosa Hemocyanin.Marine biotechnology (New York, N.Y.) · 2015
    Article
  11. Article
  12. Copper active sites in biology.Chemical reviews · 2014
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Yao CongNational Center for Macromolecular Imaging, Baylor College of Medicine, Houston, TX 77030, USA.
Qinfen Zhang
David Woolford
Thorsten Schweikardt
Htet Khant
Matthew Dougherty
Steven J Ludtke
Wah Chiu
Heinz Decker
Baylor College of Medicine · USJohannes Gutenberg University Mainz · DE

Funding

Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI JOACHIMIAK, ANDRZEJ · 1985 to 2011
$22.1M
SUPPORT AND DEVELOPMENT OF EMAN FOR ELECTRON MICROSCOPY IMAGE PROCESSINGR01GM080139 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LUDTKE, STEVEN J · 2006 to 2022
$5.4M
Center for Protein Folding Machinery (RMI)PN1EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2004 to 2004
$67k
NCRR NIH HHS P41 RR002250NCRR NIH HHS P41 RR02250NEI NIH HHS 2 PN2 EY016525NEI NIH HHS PN1 EY016525NEI NIH HHS PN2 EY016525NIGMS NIH HHS R01 GM080139NIGMS NIH HHS R01 GM08139
6 · The paper itself

Abstract

Phenoloxidases (POs) occur in all organisms and are involved in skin and hair coloring in mammals, and initiating melanization in wound healing. Mutation or overexpression of PO can cause albinism or melanoma, respectively. SDS can convert inactive PO and the oxygen carrier hemocyanin (Hc) into enzymatically active PO. Here we present single-particle cryo-EM maps at subnanometer resolution and pseudoatomic models of the 24-oligomeric Hc from scorpion Pandinus imperator in resting and SDS-activated states. Our structural analyses led to a plausible mechanism of Hc enzyme PO activation: upon SDS activation, the intrinsically flexible Hc domain I twists away from domains II and III in each subunit, exposing the entrance to the active site; this movement is stabilized by enhanced interhexamer and interdodecamer interactions, particularly in the central linker subunits. This mechanism could be applicable to other type 3 copper proteins, as the active site is highly conserved.

Indexed as

AnimalsBinding SitesCatalytic DomainCryoelectron MicroscopyEnzyme ActivationHemocyaninsModels, MolecularMonophenol MonooxygenaseProtein ConformationProtein SubunitsScorpionsSodium Dodecyl SulfateSurface-Active AgentsHemocyaninsMonophenol MonooxygenaseProtein SubunitsSodium Dodecyl SulfateSurface-Active Agents

Identifiers

PMID19446530
PMCPMC2705691
OpenAlexW2002978666

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.