ArticleBMC plant biology2009
Construction of a consensus linkage map for red clover (Trifolium pratense L.).
Article in BMC plant biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 66 citations in OpenAlex.
- Progress of Genomics-Driven Approaches for Sustaining Underutilized Legume Crops in the Post-Genomic Era.Frontiers in genetics · 2022Review
- Chromosome-scale assembly of the highly heterozygous genome of red clover (GigaByte (Hong Kong, China) · 2022Article
- Chromosome and Genome Diversity in the GenusPlants (Basel, Switzerland) · 2021Review
- Article
- Genetic diversity between two Egyptian clover varieties and QTL analysis for some agro-morphological traits.Molecular biology reports · 2019Article
- Identification of Single Nucleotide Polymorphism in Red Clover (Frontiers in plant science · 2019Article
- A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.PloS one · 2018Article
- De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover.Scientific reports · 2017Article
- Gene Classification and Mining of Molecular Markers Useful in Red Clover (Frontiers in plant science · 2017Article
- Interactions between the Bumblebee Bombus pascuorum and Red Clover (Trifolium pratense) Are Mediated by Plant Genetic Background.PloS one · 2016Article
- Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.Scientific reports · 2015Article
- A simple model for pollen-parent fecundity distributions in bee-pollinated forage legume polycrosses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Gene-based SNP discovery and genetic mapping in pea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.Breeding science · 2014Article
- Carotenoids gene markers for sweetpotato (Ipomoea batatas L. Lam): applications in genetic mapping, diversity evaluation and cross-species transference.Molecular genetics and genomics : MGG · 2014Article
- An integrated genetic map based on four mapping populations and quantitative trait loci associated with economically important traits in watermelon (Citrullus lanatus).BMC plant biology · 2014Article
- A high-density SNP Map of sunflower derived from RAD-sequencing facilitating fine-mapping of the rust resistance gene R12.PloS one · 2014Article
- Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.Plant & cell physiology · 2014Article
- A reference consensus genetic map for molecular markers and economically important traits in faba bean (Vicia faba L.).BMC genomics · 2013Article
- An integrated genetic linkage map for white clover (Trifolium repens L.) with alignment to Medicago.BMC genomics · 2013Article
Corrections and comments
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Authors and funding
8 authors at 5 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRed clover (Trifolium pratense L.) is a major forage legume that has a strong self-incompatibility system and exhibits high genetic diversity within populations. For several crop species, integrated consensus linkage maps that combine information from multiple mapping populations have been developed. For red clover, three genetic linkage maps have been published, but the information in these existing maps has not been integrated.
resultsA consensus linkage map was constructed using six mapping populations originating from eight parental accessions. Three of the six mapping populations were established for this study. The integrated red clover map was composed of 1804 loci, including 1414 microsatellite loci, 181 amplified fragment length polymorphism (AFLP) loci and 204 restriction fragment length polymorphism (RFLP) loci, in seven linkage groups. The average distance between loci and the total length of the consensus map were 0.46 cM and 836.6 cM, respectively. The locus order on the consensus map correlated highly with that of accession-specific maps. Segregation distortion was observed across linkage groups. We investigated genome-wide allele frequency in 1144 red clover individuals using 462 microsatellite loci randomly chosen from the consensus map. The average number of alleles and polymorphism information content (PIC) were 9.17 and 0.69, respectively.
conclusionA consensus genetic linkage map for red clover was constructed for the first time based on six mapping populations. The locus order on the consensus map was highly conserved among linkage maps and was sufficiently reliable for use as a reference for genetic analysis of random red clover germplasms.
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