Evidence map›Paper›PMID 19439480›Full record

ArticleJournal of virology2009

Characterization of a highly conserved domain within the severe acute respiratory syndrome coronavirus spike protein S2 domain with characteristics of a viral fusion peptide.

Ikenna G Madu, Shoshannah L Roth, Sandrine Belouzard, Gary R Whittaker

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed.

  1. Article
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  9. Review
  10. SARS-CoV-2 FP1 Destabilizes Lipid Membranes and Facilitates Pore Formation.International journal of molecular sciences · 2025
    Article
  11. Article
  12. Article
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  16. Review
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115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ikenna G MaduDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA.
Shoshannah L Roth
Sandrine Belouzard
Gary R Whittaker

Funding

West Nile Virus Infection: Novel Genetic Screens to Identify Important Host GenesR21AI076258 · NIAID · WADSWORTH CENTER · PI GLASER, ROBERT L · 2009 to 2010
$353k
Entry of Coronaviruses into Host CellsR03AI060946 · NIAID · CORNELL UNIVERSITY ITHACA · PI WHITTAKER, GARY R · 2004 to 2005
$158k
Characterizing Class 1 Fusion Proteins: Elucidation of Coronavirus fusion peptideF31GM082084 · NIGMS · CORNELL UNIVERSITY · PI MADU, IKENNA G · 2007 to 2009
$97k
NIAID NIH HHS R03 AI060946NIAID NIH HHS R21 AI076258NIGMS NIH HHS F31 GM082084
6 · The paper itself

Abstract

Many viral fusion proteins are primed by proteolytic cleavage near their fusion peptides. While the coronavirus (CoV) spike (S) protein is known to be cleaved at the S1/S2 boundary, this cleavage site is not closely linked to a fusion peptide. However, a second cleavage site has been identified in the severe acute respiratory syndrome CoV (SARS-CoV) S2 domain (R797). Here, we investigated whether this internal cleavage of S2 exposes a viral fusion peptide. We show that the residues immediately C-terminal to the SARS-CoV S2 cleavage site SFIEDLLFNKVTLADAGF are very highly conserved across all CoVs. Mutagenesis studies of these residues in SARS-CoV S, followed by cell-cell fusion and pseudotyped virion infectivity assays, showed a critical role for residues L803, L804, and F805 in membrane fusion. Mutation of the most N-terminal residue (S798) had little or no effect on membrane fusion. Biochemical analyses of synthetic peptides corresponding to the proposed S2 fusion peptide also showed an important role for this region in membrane fusion and indicated the presence of alpha-helical structure. We propose that proteolytic cleavage within S2 exposes a novel internal fusion peptide for SARS-CoV S, which may be conserved across the Coronaviridae.

Indexed as

Virus InternalizationAmino Acid SequenceAnimalsCell FusionCell LineHumansMembrane GlycoproteinsMolecular Sequence DataPeptidesProtein Structure, TertiarySequence AlignmentSevere Acute Respiratory SyndromeSevere acute respiratory syndrome-related coronavirusSpike Glycoprotein, CoronavirusViral Envelope ProteinsMembrane GlycoproteinsPeptidesSpike Glycoprotein, Coronavirusspike glycoprotein, SARS-CoVspike protein, mouse hepatitis virusViral Envelope Proteins

Identifiers

PMID19439480
PMCPMC2708636

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.